Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1261
         (701 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81526-2|CAB04265.1|  229|Caenorhabditis elegans Hypothetical pr...    29   3.2  
U97009-9|AAC69027.1|  225|Caenorhabditis elegans Hypothetical pr...    29   3.2  
Z81119-7|CAB03338.2|  310|Caenorhabditis elegans Hypothetical pr...    28   7.4  
U10438-1|AAA19083.3|  524|Caenorhabditis elegans Hypothetical pr...    28   7.4  
DQ340624-1|ABC65812.1|  524|Caenorhabditis elegans chondroitin p...    28   7.4  

>Z81526-2|CAB04265.1|  229|Caenorhabditis elegans Hypothetical
           protein F33H2.3 protein.
          Length = 229

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 19/59 (32%), Positives = 29/59 (49%)
 Frame = -3

Query: 561 LFILSMCSCDMGALSGNPTITGRIYLNVSAT*HLSRWAALLILLCCTPDSSVDMVTLNK 385
           L +LSM  C +  L+G PT+    YL++S    L   A+  +L+   PD     +  NK
Sbjct: 43  LEMLSMVKCGLTTLAGFPTLPALTYLDISDN-QLGDNASFDVLVKNAPDLKKITLASNK 100


>U97009-9|AAC69027.1|  225|Caenorhabditis elegans Hypothetical
           protein T19H12.2 protein.
          Length = 225

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 18/58 (31%), Positives = 30/58 (51%)
 Frame = -3

Query: 561 LFILSMCSCDMGALSGNPTITGRIYLNVSAT*HLSRWAALLILLCCTPDSSVDMVTLN 388
           L +LSM  C +  L G P +    YL++S    L   A+  +L+ C P+  +  +TL+
Sbjct: 40  LELLSMVKCGLTTLKGMPVLPALNYLDLSDN-ELGDDASFDVLIKCAPE--IKKITLS 94


>Z81119-7|CAB03338.2|  310|Caenorhabditis elegans Hypothetical
           protein T10H4.9 protein.
          Length = 310

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 10/19 (52%), Positives = 13/19 (68%), Gaps = 2/19 (10%)
 Frame = -3

Query: 282 YLYIFNKCKFY--GFYWNF 232
           YLY++N CKFY    +W F
Sbjct: 138 YLYVYNDCKFYFADIFWVF 156


>U10438-1|AAA19083.3|  524|Caenorhabditis elegans Hypothetical
           protein B0280.5 protein.
          Length = 524

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 12/43 (27%), Positives = 22/43 (51%)
 Frame = +3

Query: 369 NTMEGAYLMSPYPPKSLECSIAVSAALPIYSDVRLQKRLNICD 497
           N ++G Y +    P+ L CS  ++  +   +D+   + L ICD
Sbjct: 26  NALDGLYALGECEPQFLTCSGGIARIMDCPADLIYNEPLLICD 68


>DQ340624-1|ABC65812.1|  524|Caenorhabditis elegans chondroitin
           proteoglycan-2 protein.
          Length = 524

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 12/43 (27%), Positives = 22/43 (51%)
 Frame = +3

Query: 369 NTMEGAYLMSPYPPKSLECSIAVSAALPIYSDVRLQKRLNICD 497
           N ++G Y +    P+ L CS  ++  +   +D+   + L ICD
Sbjct: 26  NALDGLYALGECEPQFLTCSGGIARIMDCPADLIYNEPLLICD 68


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,312,246
Number of Sequences: 27780
Number of extensions: 239555
Number of successful extensions: 532
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 521
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 531
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1624019012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)