Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1260
         (546 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17G6.05c |||Rhophilin-2 homolog|Schizosaccharomyces pombe|ch...    33   0.027

>SPAC17G6.05c |||Rhophilin-2 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 775

 Score = 33.1 bits (72), Expect = 0.027
 Identities = 35/153 (22%), Positives = 60/153 (39%), Gaps = 16/153 (10%)
 Frame = +2

Query: 2   KDNDFIYHERIPDLKQLELISKAAIAKPLPPQEKWGSG----------GKDLFAGLVPXX 151
           KDNDF++H+ +    +L  IS      PLP ++ +GS           G DLF   VP  
Sbjct: 325 KDNDFVFHDLVVKEVELPKISPLQALPPLPLEKLYGSQDGFETAKKIVGDDLFKAFVPSA 384

Query: 152 XXXXXXXXXXXXXXXXXXXVAKLRDATQLLNSILASLNLPACIE---SCDEEGSLPESI- 319
                               A++      + ++ ASL+L    E   S  +   +P+ + 
Sbjct: 385 VTTASSLYSEETAKVFRAEQAEVERQNTQMATVFASLDLSRLQEITHSDSKTNFIPKELI 444

Query: 320 --RSKARAVRDAGGLHELQRLMAELPDLLQRNK 412
             RS+  +      +HEL     +L  ++ + K
Sbjct: 445 EARSQLISFNPTFKIHELFAKSTKLKQIIAKIK 477


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,181,027
Number of Sequences: 5004
Number of extensions: 13168
Number of successful extensions: 48
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 48
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 225926624
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)