Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1260
         (546 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0495 - 18318028-18320399,18322450-18322981,18323097-183232...    70   1e-12
01_03_0162 + 13342996-13344216                                         29   1.8  
05_05_0199 - 23165776-23166259,23166356-23167128,23167633-231678...    29   3.2  
08_02_1571 - 27935756-27935950,27936048-27936199,27936294-279364...    28   4.2  
02_05_0731 + 31299466-31299643,31300369-31300673,31300992-31301660     28   5.6  
11_03_0128 - 10437407-10438049,10438097-10438272                       27   7.4  

>10_08_0495 -
           18318028-18320399,18322450-18322981,18323097-18323200,
           18323653-18323701,18323979-18324119,18324889-18324957,
           18325048-18325137,18325301-18326251,18326831-18327502
          Length = 1659

 Score = 69.7 bits (163), Expect = 1e-12
 Identities = 45/175 (25%), Positives = 76/175 (43%)
 Frame = +2

Query: 2   KDNDFIYHERIPDLKQLELISKAAIAKPLPPQEKWGSGGKDLFAGLVPXXXXXXXXXXXX 181
           K+ND +Y  R+PD   L  +  A++ KP    E   +  + LF+ LVP            
Sbjct: 326 KENDRVYLMRVPDASSLGALPAASLVKPTSLAEVLDASKERLFSSLVPDGSMKALSKYTE 385

Query: 182 XXXXXXXXXVAKLRDATQLLNSILASLNLPACIESCDEEGSLPESIRSKARAVRDAGGLH 361
                      KL+ A+++    L  ++LP  I S +   +LP  ++    AV+ +GG  
Sbjct: 386 MVDNIIRTQAEKLQQASEITRVRLKEMDLPDSILSLEGNITLPLDLKEDVEAVQISGGPA 445

Query: 362 ELQRLMAELPDLLQRNKDIXXXXXXXXXXXXXXXXXXXXQFGARWTRTPFAALTE 526
            L+  + +L DL + N+++                    QFG+RWTR   + LT+
Sbjct: 446 GLEAELQQLRDLSRVNQELLVQTEEMLQKEANEDAQFRTQFGSRWTRPQSSTLTK 500


>01_03_0162 + 13342996-13344216
          Length = 406

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 19/52 (36%), Positives = 27/52 (51%)
 Frame = +2

Query: 239 LNSILASLNLPACIESCDEEGSLPESIRSKARAVRDAGGLHELQRLMAELPD 394
           L+ I+ +   PA +ES D       + R +A A+ D GGLH LQ + A   D
Sbjct: 93  LSGIITAEEAPALLESIDA-AIAAATARQEALALLDGGGLH-LQHVPASASD 142


>05_05_0199 -
           23165776-23166259,23166356-23167128,23167633-23167869,
           23167973-23168197
          Length = 572

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +2

Query: 26  ERIPDLKQLELISKAAIAKPLPPQEKWGSGG 118
           E+ PD +  E++ K A + P PPQ   G GG
Sbjct: 256 EQSPDGQVTEIVYKGAHSHPKPPQNGRGRGG 286


>08_02_1571 -
           27935756-27935950,27936048-27936199,27936294-27936403,
           27936845-27937050,27937212-27937295,27937367-27937525,
           27937621-27937728,27938103-27938278,27938376-27938462,
           27938546-27938657,27938737-27938817,27938890-27938943,
           27939107-27939183,27939262-27939331,27939552-27939666,
           27939840-27939937,27940041-27940179,27940267-27940868,
           27941270-27941399,27941471-27941529
          Length = 937

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 19/38 (50%), Positives = 22/38 (57%), Gaps = 4/38 (10%)
 Frame = +2

Query: 17  IYHERIPDLKQLELISKAAI----AKPLPPQEKWGSGG 118
           +Y+E I DL   E ISKAA+     KPLP  E  G GG
Sbjct: 188 LYNEEITDLLAPEEISKAALEERQKKPLPLMED-GKGG 224


>02_05_0731 + 31299466-31299643,31300369-31300673,31300992-31301660
          Length = 383

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
 Frame = +2

Query: 11  DFIYHE-RIPDLKQLELISKAAIAKPLPPQEKW 106
           D++ HE R+P L    L  K  + K +PP + W
Sbjct: 132 DWMMHEFRLPSLTDPSLPQKKPLEKIIPPNDSW 164


>11_03_0128 - 10437407-10438049,10438097-10438272
          Length = 272

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +3

Query: 348 RAACTSCSASWPSCRTCCRGTRTS 419
           R + ++ S S  +CRTCCR T  S
Sbjct: 130 RRSRSTASTSSTTCRTCCRATPNS 153


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,481,149
Number of Sequences: 37544
Number of extensions: 123510
Number of successful extensions: 685
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 660
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 683
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1222086348
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)