Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-1260
(546 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z29561-3|CAD54153.1| 846|Caenorhabditis elegans Hypothetical pr... 123 7e-29
Z29561-2|CAD54152.1| 882|Caenorhabditis elegans Hypothetical pr... 123 7e-29
Z29561-1|CAA82667.2| 861|Caenorhabditis elegans Hypothetical pr... 123 7e-29
U73679-1|AAC67305.1| 861|Caenorhabditis elegans YNK1-a protein. 123 7e-29
Z29561-4|CAD91697.1| 498|Caenorhabditis elegans Hypothetical pr... 46 2e-05
U64833-10|AAB04821.2| 427|Caenorhabditis elegans Hypothetical p... 31 0.54
AF098986-1|AAC67425.1| 747|Caenorhabditis elegans T box family ... 30 1.2
EF378622-1|ABN54457.1| 1492|Caenorhabditis elegans enhancer of g... 29 2.9
AL117201-3|CAL64007.1| 1512|Caenorhabditis elegans Hypothetical ... 29 2.9
Z68316-11|CAO82045.1| 1242|Caenorhabditis elegans Hypothetical p... 27 8.8
Z68316-10|CAO82044.1| 1289|Caenorhabditis elegans Hypothetical p... 27 8.8
Z68316-9|CAA92684.2| 1291|Caenorhabditis elegans Hypothetical pr... 27 8.8
Z68297-10|CAO82029.1| 1242|Caenorhabditis elegans Hypothetical p... 27 8.8
Z68297-9|CAO82028.1| 1289|Caenorhabditis elegans Hypothetical pr... 27 8.8
Z68297-8|CAA92596.2| 1291|Caenorhabditis elegans Hypothetical pr... 27 8.8
DQ140399-1|AAZ73761.1| 1291|Caenorhabditis elegans lin-48 expres... 27 8.8
AC006630-3|AAK68325.1| 257|Caenorhabditis elegans Hypothetical ... 27 8.8
>Z29561-3|CAD54153.1| 846|Caenorhabditis elegans Hypothetical
protein R10E12.1c protein.
Length = 846
Score = 123 bits (297), Expect = 7e-29
Identities = 64/174 (36%), Positives = 88/174 (50%)
Frame = +2
Query: 2 KDNDFIYHERIPDLKQLELISKAAIAKPLPPQEKWGSGGKDLFAGLVPXXXXXXXXXXXX 181
KDNDFIYHE++ D + L + KA +AKP P Q +D+FA LVP
Sbjct: 319 KDNDFIYHEKVSDFRTLPTLPKAVLAKPTPMQTPMTPSFRDMFAVLVPVQVHNAMQSYDA 378
Query: 182 XXXXXXXXXVAKLRDATQLLNSILASLNLPACIESCDEEGSLPESIRSKARAVRDAGGLH 361
++R+ATQL+N +LASLNLPA ++ +LPES++ K+ ++ GG
Sbjct: 379 RKAELVNMETVRMREATQLMNGVLASLNLPAALDDVTSTETLPESLKLKSAKLKQNGGSS 438
Query: 362 ELQRLMAELPDLLQRNKDIXXXXXXXXXXXXXXXXXXXXQFGARWTRTPFAALT 523
E+ RL +ELP L QRN+DI Q G +WTR LT
Sbjct: 439 EIMRLFSELPTLYQRNEDILTETSRILNEEKESDDTMRKQLGTKWTRMSSEQLT 492
>Z29561-2|CAD54152.1| 882|Caenorhabditis elegans Hypothetical
protein R10E12.1b protein.
Length = 882
Score = 123 bits (297), Expect = 7e-29
Identities = 64/174 (36%), Positives = 88/174 (50%)
Frame = +2
Query: 2 KDNDFIYHERIPDLKQLELISKAAIAKPLPPQEKWGSGGKDLFAGLVPXXXXXXXXXXXX 181
KDNDFIYHE++ D + L + KA +AKP P Q +D+FA LVP
Sbjct: 319 KDNDFIYHEKVSDFRTLPTLPKAVLAKPTPMQTPMTPSFRDMFAVLVPVQVHNAMQSYDA 378
Query: 182 XXXXXXXXXVAKLRDATQLLNSILASLNLPACIESCDEEGSLPESIRSKARAVRDAGGLH 361
++R+ATQL+N +LASLNLPA ++ +LPES++ K+ ++ GG
Sbjct: 379 RKAELVNMETVRMREATQLMNGVLASLNLPAALDDVTSTETLPESLKLKSAKLKQNGGSS 438
Query: 362 ELQRLMAELPDLLQRNKDIXXXXXXXXXXXXXXXXXXXXQFGARWTRTPFAALT 523
E+ RL +ELP L QRN+DI Q G +WTR LT
Sbjct: 439 EIMRLFSELPTLYQRNEDILTETSRILNEEKESDDTMRKQLGTKWTRMSSEQLT 492
>Z29561-1|CAA82667.2| 861|Caenorhabditis elegans Hypothetical
protein R10E12.1a protein.
Length = 861
Score = 123 bits (297), Expect = 7e-29
Identities = 64/174 (36%), Positives = 88/174 (50%)
Frame = +2
Query: 2 KDNDFIYHERIPDLKQLELISKAAIAKPLPPQEKWGSGGKDLFAGLVPXXXXXXXXXXXX 181
KDNDFIYHE++ D + L + KA +AKP P Q +D+FA LVP
Sbjct: 319 KDNDFIYHEKVSDFRTLPTLPKAVLAKPTPMQTPMTPSFRDMFAVLVPVQVHNAMQSYDA 378
Query: 182 XXXXXXXXXVAKLRDATQLLNSILASLNLPACIESCDEEGSLPESIRSKARAVRDAGGLH 361
++R+ATQL+N +LASLNLPA ++ +LPES++ K+ ++ GG
Sbjct: 379 RKAELVNMETVRMREATQLMNGVLASLNLPAALDDVTSTETLPESLKLKSAKLKQNGGSS 438
Query: 362 ELQRLMAELPDLLQRNKDIXXXXXXXXXXXXXXXXXXXXQFGARWTRTPFAALT 523
E+ RL +ELP L QRN+DI Q G +WTR LT
Sbjct: 439 EIMRLFSELPTLYQRNEDILTETSRILNEEKESDDTMRKQLGTKWTRMSSEQLT 492
>U73679-1|AAC67305.1| 861|Caenorhabditis elegans YNK1-a protein.
Length = 861
Score = 123 bits (297), Expect = 7e-29
Identities = 64/174 (36%), Positives = 88/174 (50%)
Frame = +2
Query: 2 KDNDFIYHERIPDLKQLELISKAAIAKPLPPQEKWGSGGKDLFAGLVPXXXXXXXXXXXX 181
KDNDFIYHE++ D + L + KA +AKP P Q +D+FA LVP
Sbjct: 319 KDNDFIYHEKVSDFRTLPTLPKAVLAKPTPMQTPMTPSFRDMFAVLVPVQVHNAMQSYDA 378
Query: 182 XXXXXXXXXVAKLRDATQLLNSILASLNLPACIESCDEEGSLPESIRSKARAVRDAGGLH 361
++R+ATQL+N +LASLNLPA ++ +LPES++ K+ ++ GG
Sbjct: 379 RKAELVNMETVRMREATQLMNGVLASLNLPAALDDVTSTETLPESLKLKSAKLKQNGGSS 438
Query: 362 ELQRLMAELPDLLQRNKDIXXXXXXXXXXXXXXXXXXXXQFGARWTRTPFAALT 523
E+ RL +ELP L QRN+DI Q G +WTR LT
Sbjct: 439 EIMRLFSELPTLYQRNEDILTETSRILNEEKESDDTMRKQLGTKWTRMSSEQLT 492
>Z29561-4|CAD91697.1| 498|Caenorhabditis elegans Hypothetical
protein R10E12.1d protein.
Length = 498
Score = 45.6 bits (103), Expect = 2e-05
Identities = 18/32 (56%), Positives = 23/32 (71%)
Frame = +2
Query: 2 KDNDFIYHERIPDLKQLELISKAAIAKPLPPQ 97
KDNDFIYHE++ D + L + KA +AKP P Q
Sbjct: 319 KDNDFIYHEKVSDFRTLPTLPKAVLAKPTPMQ 350
>U64833-10|AAB04821.2| 427|Caenorhabditis elegans Hypothetical
protein B0507.2 protein.
Length = 427
Score = 31.1 bits (67), Expect = 0.54
Identities = 15/43 (34%), Positives = 26/43 (60%), Gaps = 6/43 (13%)
Frame = +2
Query: 2 KDNDFIYHERIPD-LKQLELISKAAIAK-----PLPPQEKWGS 112
++N FIYH+++PD + QL++ + +AK PP E W +
Sbjct: 335 RENGFIYHQKVPDEIPQLDVEATYGLAKLDSFTYPPPAESWNT 377
>AF098986-1|AAC67425.1| 747|Caenorhabditis elegans T box family
protein 31 protein.
Length = 747
Score = 29.9 bits (64), Expect = 1.2
Identities = 9/12 (75%), Positives = 11/12 (91%)
Frame = +3
Query: 375 SWPSCRTCCRGT 410
SWPSC +CCRG+
Sbjct: 432 SWPSCLSCCRGS 443
>EF378622-1|ABN54457.1| 1492|Caenorhabditis elegans enhancer of
glp-1 protein.
Length = 1492
Score = 28.7 bits (61), Expect = 2.9
Identities = 9/12 (75%), Positives = 12/12 (100%)
Frame = +2
Query: 2 KDNDFIYHERIP 37
K+NDFIYH+R+P
Sbjct: 332 KENDFIYHDRVP 343
>AL117201-3|CAL64007.1| 1512|Caenorhabditis elegans Hypothetical
protein Y53H1C.2a protein.
Length = 1512
Score = 28.7 bits (61), Expect = 2.9
Identities = 9/12 (75%), Positives = 12/12 (100%)
Frame = +2
Query: 2 KDNDFIYHERIP 37
K+NDFIYH+R+P
Sbjct: 352 KENDFIYHDRVP 363
>Z68316-11|CAO82045.1| 1242|Caenorhabditis elegans Hypothetical
protein F11A10.1c protein.
Length = 1242
Score = 27.1 bits (57), Expect = 8.8
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = +2
Query: 287 CDEEGSLPESIRSKARAVRDAGGLHELQRLMAELPDLLQRNK 412
C+ + S E I + +R ++DAG +L+ E+P R K
Sbjct: 972 CELDESFVERIETVSRMLQDAGVTPTSDKLLTEIPKGFARKK 1013
>Z68316-10|CAO82044.1| 1289|Caenorhabditis elegans Hypothetical
protein F11A10.1b protein.
Length = 1289
Score = 27.1 bits (57), Expect = 8.8
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = +2
Query: 287 CDEEGSLPESIRSKARAVRDAGGLHELQRLMAELPDLLQRNK 412
C+ + S E I + +R ++DAG +L+ E+P R K
Sbjct: 1019 CELDESFVERIETVSRMLQDAGVTPTSDKLLTEIPKGFARKK 1060
>Z68316-9|CAA92684.2| 1291|Caenorhabditis elegans Hypothetical protein
F11A10.1a protein.
Length = 1291
Score = 27.1 bits (57), Expect = 8.8
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = +2
Query: 287 CDEEGSLPESIRSKARAVRDAGGLHELQRLMAELPDLLQRNK 412
C+ + S E I + +R ++DAG +L+ E+P R K
Sbjct: 1021 CELDESFVERIETVSRMLQDAGVTPTSDKLLTEIPKGFARKK 1062
>Z68297-10|CAO82029.1| 1242|Caenorhabditis elegans Hypothetical
protein F11A10.1c protein.
Length = 1242
Score = 27.1 bits (57), Expect = 8.8
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = +2
Query: 287 CDEEGSLPESIRSKARAVRDAGGLHELQRLMAELPDLLQRNK 412
C+ + S E I + +R ++DAG +L+ E+P R K
Sbjct: 972 CELDESFVERIETVSRMLQDAGVTPTSDKLLTEIPKGFARKK 1013
>Z68297-9|CAO82028.1| 1289|Caenorhabditis elegans Hypothetical protein
F11A10.1b protein.
Length = 1289
Score = 27.1 bits (57), Expect = 8.8
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = +2
Query: 287 CDEEGSLPESIRSKARAVRDAGGLHELQRLMAELPDLLQRNK 412
C+ + S E I + +R ++DAG +L+ E+P R K
Sbjct: 1019 CELDESFVERIETVSRMLQDAGVTPTSDKLLTEIPKGFARKK 1060
>Z68297-8|CAA92596.2| 1291|Caenorhabditis elegans Hypothetical protein
F11A10.1a protein.
Length = 1291
Score = 27.1 bits (57), Expect = 8.8
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = +2
Query: 287 CDEEGSLPESIRSKARAVRDAGGLHELQRLMAELPDLLQRNK 412
C+ + S E I + +R ++DAG +L+ E+P R K
Sbjct: 1021 CELDESFVERIETVSRMLQDAGVTPTSDKLLTEIPKGFARKK 1062
>DQ140399-1|AAZ73761.1| 1291|Caenorhabditis elegans lin-48 expression
abnormal protein protein.
Length = 1291
Score = 27.1 bits (57), Expect = 8.8
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = +2
Query: 287 CDEEGSLPESIRSKARAVRDAGGLHELQRLMAELPDLLQRNK 412
C+ + S E I + +R ++DAG +L+ E+P R K
Sbjct: 1021 CELDESFVERIETVSRMLQDAGVTPTSDKLLTEIPKGFARKK 1062
>AC006630-3|AAK68325.1| 257|Caenorhabditis elegans Hypothetical
protein F14H12.3 protein.
Length = 257
Score = 27.1 bits (57), Expect = 8.8
Identities = 11/23 (47%), Positives = 14/23 (60%), Gaps = 2/23 (8%)
Frame = +3
Query: 336 PCGTRAAC--TSCSASWPSCRTC 398
PC +AAC T+C+ P C TC
Sbjct: 182 PCPQQAACPCTTCNQPPPPCNTC 204
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,888,068
Number of Sequences: 27780
Number of extensions: 80428
Number of successful extensions: 359
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 327
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 355
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1102518352
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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