Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1259
         (592 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC31F10.10c |||zf-MYND type zinc finger protein|Schizosaccharo...    30   0.22 
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom...    27   2.0  
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom...    27   2.0  
SPAC1F7.05 |cdc22||ribonucleoside reductase large subunit Cdc22|...    26   3.6  
SPBC4.02c |||conserved fungal protein|Schizosaccharomyces pombe|...    26   4.7  
SPAC23H4.02 |ppk9||serine/threonine protein kinase Ppk9 |Schizos...    25   8.3  
SPBC21.05c |ral2||Ras guanyl-nucleotide exchange factor Ral2 |Sc...    25   8.3  

>SPBC31F10.10c |||zf-MYND type zinc finger
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 574

 Score = 30.3 bits (65), Expect = 0.22
 Identities = 15/40 (37%), Positives = 20/40 (50%)
 Frame = -3

Query: 158 SAAPCTPRGTGRSSPRCTSPGSRTSCRTPGPALSFLNTHL 39
           SAAP TP  T   +   T+P S +  R  GPA   +N  +
Sbjct: 267 SAAPSTPTSTENVNYNMTTPSSPSYSRQTGPASETINDEI 306


>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
           pombe|chr 1||Partial|Manual
          Length = 1887

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = +2

Query: 299 CIQKDTCFCPKGHYGRRCEFSKCVIPCLNGG 391
           CI++      K  Y +RC+F K     LNGG
Sbjct: 266 CIRRTALQTVKNKYAQRCQFFKVDYVPLNGG 296


>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase
           Tlh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1919

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = +2

Query: 299 CIQKDTCFCPKGHYGRRCEFSKCVIPCLNGG 391
           CI++      K  Y +RC+F K     LNGG
Sbjct: 266 CIRRTALQTVKNKYAQRCQFFKVDYVPLNGG 296


>SPAC1F7.05 |cdc22||ribonucleoside reductase large subunit
           Cdc22|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 811

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 13/46 (28%), Positives = 20/46 (43%)
 Frame = +1

Query: 139 GVHGAALPHGAVLPAVHERRQLHRARPLLLSAGLPGPTLRGRYMCT 276
           G+HG  +        +  +R    A P L +AG P P L   ++ T
Sbjct: 177 GIHGEDIEAAIETYNLMSQRYFTHASPTLFNAGTPRPQLSSCFLVT 222


>SPBC4.02c |||conserved fungal protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 456

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +2

Query: 50  LERTGPDPECDKKCANQGWCNEEKICQCPE 139
           L  TG   E ++K A +GW NE+ + Q  E
Sbjct: 93  LAATGDGVEVEEKRAWEGWWNEKIVSQARE 122


>SPAC23H4.02 |ppk9||serine/threonine protein kinase Ppk9
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 532

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 12/48 (25%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
 Frame = -2

Query: 213 GAVQLPPFMHCG*HSAVRQCCPMYPSGHWQIFSSLHQPWF-AHFLSHS 73
           G   +P F+       +RQ   + P+   ++   +  PWF A   +HS
Sbjct: 235 GIYTIPSFVSSSASDLIRQMLMVLPTSRIKVAEIMQHPWFIADLPTHS 282


>SPBC21.05c |ral2||Ras guanyl-nucleotide exchange factor Ral2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 611

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 12/30 (40%), Positives = 15/30 (50%), Gaps = 2/30 (6%)
 Frame = +2

Query: 143 YMGQHCRTALCYPQC--MNGGNCTAPGLCS 226
           Y  + C   L Y  C  +NG  CTA  LC+
Sbjct: 507 YSFETCSAFLHYIYCGTLNGSYCTAKNLCN 536


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,248,994
Number of Sequences: 5004
Number of extensions: 47714
Number of successful extensions: 126
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 256184654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)