Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1259
         (592 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective...    23   3.0  
AY496432-1|AAS75803.1|   95|Apis mellifera defensin/royalisin pr...    22   3.9  
AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex det...    22   3.9  
AJ308527-1|CAC33429.1|   57|Apis mellifera defensin protein.           22   3.9  
AY569703-1|AAS86656.1|  396|Apis mellifera complementary sex det...    21   6.8  
AY569701-1|AAS86654.1|  407|Apis mellifera complementary sex det...    21   6.8  
AY569700-1|AAS86653.1|  407|Apis mellifera complementary sex det...    21   6.8  
AY569699-1|AAS86652.1|  396|Apis mellifera complementary sex det...    21   6.8  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    21   9.0  
AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength rhodo...    21   9.0  

>AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective
           protein-1 protein.
          Length = 128

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 11/24 (45%), Positives = 13/24 (54%), Gaps = 1/24 (4%)
 Frame = +2

Query: 218 LCSCPQGYQGRHCEGGICA-QKCM 286
           LC  PQ Y G   EG  C+  KC+
Sbjct: 68  LCGGPQNYLGICAEGMQCSCNKCI 91


>AY496432-1|AAS75803.1|   95|Apis mellifera defensin/royalisin
           precursor protein.
          Length = 95

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = +2

Query: 236 GYQGRHCEGGIC 271
           G  G HCE G+C
Sbjct: 68  GKAGGHCEKGVC 79


>AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex
           determiner protein.
          Length = 425

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = -2

Query: 279 FCAHIPPSQCRPW*PCGQEQRP 214
           +C + PP    PW    QEQ P
Sbjct: 370 YCGNFPPRSMEPWISM-QEQIP 390


>AJ308527-1|CAC33429.1|   57|Apis mellifera defensin protein.
          Length = 57

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = +2

Query: 236 GYQGRHCEGGIC 271
           G  G HCE G+C
Sbjct: 43  GKAGGHCEKGVC 54


>AY569703-1|AAS86656.1|  396|Apis mellifera complementary sex
           determiner protein.
          Length = 396

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 10/26 (38%), Positives = 12/26 (46%)
 Frame = -2

Query: 291 PFIHFCAHIPPSQCRPW*PCGQEQRP 214
           P   +C + PP    PW    QEQ P
Sbjct: 337 PIPIYCGNFPPRPMGPWISI-QEQIP 361


>AY569701-1|AAS86654.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 10/26 (38%), Positives = 12/26 (46%)
 Frame = -2

Query: 291 PFIHFCAHIPPSQCRPW*PCGQEQRP 214
           P   +C + PP    PW    QEQ P
Sbjct: 348 PIPIYCGNFPPRPMGPWISI-QEQIP 372


>AY569700-1|AAS86653.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 10/26 (38%), Positives = 12/26 (46%)
 Frame = -2

Query: 291 PFIHFCAHIPPSQCRPW*PCGQEQRP 214
           P   +C + PP    PW    QEQ P
Sbjct: 348 PIPIYCGNFPPRPMGPWISI-QEQIP 372


>AY569699-1|AAS86652.1|  396|Apis mellifera complementary sex
           determiner protein.
          Length = 396

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 10/26 (38%), Positives = 12/26 (46%)
 Frame = -2

Query: 291 PFIHFCAHIPPSQCRPW*PCGQEQRP 214
           P   +C + PP    PW    QEQ P
Sbjct: 337 PIPIYCGNFPPRPMGPWISI-QEQIP 361


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +1

Query: 313 YLFLS*RTLRTEMRIF 360
           Y+FLS ++LRT   +F
Sbjct: 75  YIFLSTKSLRTPSNLF 90


>AY703752-1|AAU12748.1|  152|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 152

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +1

Query: 313 YLFLS*RTLRTEMRIF 360
           Y+FLS ++LRT   +F
Sbjct: 41  YIFLSTKSLRTPSNLF 56


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 161,527
Number of Sequences: 438
Number of extensions: 3918
Number of successful extensions: 14
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17237673
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)