Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1258
         (626 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC31F10.14c |hip3|hir3|HIRA interacting protein Hip3|Schizosac...    28   0.96 
SPAC29B12.02c |set2||histone lysine methyltransferase Set2 |Schi...    26   3.9  
SPAC3A11.05c |kms1||meiotic spindle pole body protein Kms1|Schiz...    25   6.8  
SPAC1805.11c |rps2602|rps26-2|40S ribosomal protein S26|Schizosa...    25   9.0  

>SPBC31F10.14c |hip3|hir3|HIRA interacting protein
           Hip3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1630

 Score = 28.3 bits (60), Expect = 0.96
 Identities = 16/32 (50%), Positives = 18/32 (56%)
 Frame = +3

Query: 9   DSHSARSTDGELIKEISDIATNECNRYNIALK 104
           +SH   STD EL  EISD A  + N  N A K
Sbjct: 287 ESHDLESTDSELWSEISD-AGPDTNTINTAAK 317


>SPAC29B12.02c |set2||histone lysine methyltransferase Set2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 798

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = +3

Query: 450 EVDESHTNARPELRQSLQPLRHPPPKNGE 536
           +V    TNA P   QS  PLR   P+ G+
Sbjct: 505 QVAPQSTNAEPSNNQSNPPLRDQEPQRGD 533


>SPAC3A11.05c |kms1||meiotic spindle pole body protein
           Kms1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 607

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 13/49 (26%), Positives = 26/49 (53%)
 Frame = -2

Query: 367 AGLFGIVREKI*IQMKFPTRLRRFNESTNLSEVYCLK*SKRNST*SYLR 221
           +GL+   +E   +Q+++ T LR+F + T   E   L  S+ +   + +R
Sbjct: 280 SGLYSTKKELSALQVRYATLLRKFTDQTKKIEELSLAASRSSENENTIR 328


>SPAC1805.11c |rps2602|rps26-2|40S ribosomal protein
           S26|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 119

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 8/24 (33%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
 Frame = -3

Query: 138 LHKHFNLNRNFISMQYCIDC-IHS 70
           ++  + + + +I +QYC+ C IHS
Sbjct: 58  VYSEYTIPKLYIKLQYCVSCAIHS 81


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,363,926
Number of Sequences: 5004
Number of extensions: 45087
Number of successful extensions: 120
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)