Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1258
         (626 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z74043-10|CAA98542.2|  653|Caenorhabditis elegans Hypothetical p...    30   1.6  
U13875-4|AAK67215.1| 1510|Caenorhabditis elegans Set (trithorax/...    29   3.6  
U13875-3|AAK67214.1| 1507|Caenorhabditis elegans Set (trithorax/...    29   3.6  

>Z74043-10|CAA98542.2|  653|Caenorhabditis elegans Hypothetical
           protein T19B10.3 protein.
          Length = 653

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 13/57 (22%), Positives = 32/57 (56%)
 Frame = -3

Query: 252 LNVIALEAILDSKFDYNIVFINDFISEICPGTFVNNNVLHKHFNLNRNFISMQYCID 82
           L ++A +A ++S  +  I    DF+     G +++  +  +++NL RN + ++ C++
Sbjct: 432 LGLVAYQAKINSCGNLTIPSFGDFVHVYLNGKYIDT-LTRRYYNLTRNSVIIEGCLE 487


>U13875-4|AAK67215.1| 1510|Caenorhabditis elegans Set
           (trithorax/polycomb) domaincontaining protein 2, isoform
           c protein.
          Length = 1510

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +3

Query: 450 EVDESHTNARPELRQSLQPLRHPPPKNGEPS 542
           E+  +HTN+ P L+    P   PPP  G PS
Sbjct: 536 ELSSTHTNSVPNLKSHETP--PPPPPKGHPS 564


>U13875-3|AAK67214.1| 1507|Caenorhabditis elegans Set
           (trithorax/polycomb) domaincontaining protein 2, isoform
           a protein.
          Length = 1507

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +3

Query: 450 EVDESHTNARPELRQSLQPLRHPPPKNGEPS 542
           E+  +HTN+ P L+    P   PPP  G PS
Sbjct: 536 ELSSTHTNSVPNLKSHETP--PPPPPKGHPS 564


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,012,474
Number of Sequences: 27780
Number of extensions: 251040
Number of successful extensions: 565
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 550
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 565
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1374536540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)