Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1258
         (626 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    23   1.8  
M29494-1|AAA27729.1|   74|Apis mellifera protein ( Bee homeobox-...    22   4.3  
DQ325133-1|ABD14147.1|  181|Apis mellifera complementary sex det...    22   4.3  
DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex det...    22   4.3  
DQ325075-1|ABD14089.1|  181|Apis mellifera complementary sex det...    22   4.3  
DQ325074-1|ABD14088.1|  181|Apis mellifera complementary sex det...    22   4.3  
DQ325073-1|ABD14087.1|  181|Apis mellifera complementary sex det...    22   4.3  
DQ325072-1|ABD14086.1|  181|Apis mellifera complementary sex det...    22   4.3  
DQ325071-1|ABD14085.1|  181|Apis mellifera complementary sex det...    22   4.3  
DQ325070-1|ABD14084.1|  181|Apis mellifera complementary sex det...    22   4.3  
DQ325069-1|ABD14083.1|  181|Apis mellifera complementary sex det...    22   4.3  
DQ325068-1|ABD14082.1|  181|Apis mellifera complementary sex det...    22   4.3  
AY569696-1|AAS86649.1|  414|Apis mellifera complementary sex det...    22   4.3  
AY569695-1|AAS86648.1|  414|Apis mellifera complementary sex det...    22   4.3  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    21   9.8  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   9.8  

>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = +3

Query: 507 LRHPPPKNGEPS*KYSINALGRYNNFY*SDVCLY 608
           LR PP K  +P      NA G Y   Y S+V +Y
Sbjct: 101 LRLPPDKVWKPDIVLFNNADGNYEVRYKSNVLIY 134


>M29494-1|AAA27729.1|   74|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H15. ).
          Length = 74

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +1

Query: 499 FNHFATRRRKMANPH 543
           +NH+ TRRR++   H
Sbjct: 29  YNHYLTRRRRIEIAH 43


>DQ325133-1|ABD14147.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = -3

Query: 165 PGTFVNNNVLHKHFNLNRNF 106
           P    NNN L  ++N N N+
Sbjct: 79  PKIISNNNPLSNNYNYNNNY 98


>DQ325115-1|ABD14129.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = -3

Query: 165 PGTFVNNNVLHKHFNLNRNF 106
           P    NNN L  ++N N N+
Sbjct: 79  PKIISNNNSLSNNYNYNNNY 98


>DQ325075-1|ABD14089.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = -3

Query: 165 PGTFVNNNVLHKHFNLNRNF 106
           P    NNN L  ++N N N+
Sbjct: 79  PKIISNNNSLSNNYNYNNNY 98


>DQ325074-1|ABD14088.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = -3

Query: 165 PGTFVNNNVLHKHFNLNRNF 106
           P    NNN L  ++N N N+
Sbjct: 79  PKIISNNNSLSNNYNYNNNY 98


>DQ325073-1|ABD14087.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = -3

Query: 165 PGTFVNNNVLHKHFNLNRNF 106
           P    NNN L  ++N N N+
Sbjct: 79  PKIISNNNSLSNNYNYNNNY 98


>DQ325072-1|ABD14086.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = -3

Query: 165 PGTFVNNNVLHKHFNLNRNF 106
           P    NNN L  ++N N N+
Sbjct: 79  PKIISNNNSLSNNYNYNNNY 98


>DQ325071-1|ABD14085.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = -3

Query: 165 PGTFVNNNVLHKHFNLNRNF 106
           P    NNN L  ++N N N+
Sbjct: 79  PKIISNNNSLSNNYNYNNNY 98


>DQ325070-1|ABD14084.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = -3

Query: 165 PGTFVNNNVLHKHFNLNRNF 106
           P    NNN L  ++N N N+
Sbjct: 79  PKIISNNNSLSNNYNYNNNY 98


>DQ325069-1|ABD14083.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = -3

Query: 165 PGTFVNNNVLHKHFNLNRNF 106
           P    NNN L  ++N N N+
Sbjct: 79  PKIISNNNSLSNNYNYNNNY 98


>DQ325068-1|ABD14082.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = -3

Query: 165 PGTFVNNNVLHKHFNLNRNF 106
           P    NNN L  ++N N N+
Sbjct: 79  PKIISNNNSLSNNYNYNNNY 98


>AY569696-1|AAS86649.1|  414|Apis mellifera complementary sex
           determiner protein.
          Length = 414

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = -3

Query: 165 PGTFVNNNVLHKHFNLNRNF 106
           P    NNN L  ++N N N+
Sbjct: 312 PKIISNNNSLSNNYNYNNNY 331


>AY569695-1|AAS86648.1|  414|Apis mellifera complementary sex
           determiner protein.
          Length = 414

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = -3

Query: 165 PGTFVNNNVLHKHFNLNRNF 106
           P    NNN L  ++N N N+
Sbjct: 312 PKIISNNNSLSNNYNYNNNY 331


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 8/21 (38%), Positives = 15/21 (71%)
 Frame = -3

Query: 282 IYLKFIA*NNLNVIALEAILD 220
           I++  +  NN+N+I L+ I+D
Sbjct: 70  IHIGSVPVNNINLILLQNIID 90


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 8/19 (42%), Positives = 9/19 (47%)
 Frame = -1

Query: 560 VYRIFS*GFAIFRRRVAKW 504
           +Y  F   F  FRR  A W
Sbjct: 530 IYNWFQNTFCYFRRNAATW 548


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 158,239
Number of Sequences: 438
Number of extensions: 2788
Number of successful extensions: 17
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18704709
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)