Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1252
         (772 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016670-5|AAB66104.1| 1193|Caenorhabditis elegans Hypothetical ...    29   3.7  
Z78412-6|CAD24482.1|  424|Caenorhabditis elegans Hypothetical pr...    28   8.5  
Z78412-5|CAB01648.1|  484|Caenorhabditis elegans Hypothetical pr...    28   8.5  
L03524-2|AAA28151.1|  488|Caenorhabditis elegans protein-tyrosin...    28   8.5  

>AF016670-5|AAB66104.1| 1193|Caenorhabditis elegans Hypothetical
            protein K02F6.4 protein.
          Length = 1193

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 15/51 (29%), Positives = 25/51 (49%)
 Frame = -2

Query: 294  VLRKPKQEEEEDV*YNKNSNNQQI*NTYAFISENIMFDVFKW*VTLAKSPN 142
            ++ K K E  ++  + KN+N   I   Y F+   + F +  W +T  K PN
Sbjct: 1131 IITKSKDELVKEYAFVKNNNCYTIFTYYEFLQFLLAFKITHWKLTGKKEPN 1181


>Z78412-6|CAD24482.1|  424|Caenorhabditis elegans Hypothetical
           protein M176.6b protein.
          Length = 424

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -2

Query: 327 TPVARRWSRPSVLRKPKQEEEEDV 256
           TP+  RW  P V+R+ K  E+ DV
Sbjct: 294 TPMPARWMAPEVMREGKCTEKSDV 317


>Z78412-5|CAB01648.1|  484|Caenorhabditis elegans Hypothetical
           protein M176.6a protein.
          Length = 484

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -2

Query: 327 TPVARRWSRPSVLRKPKQEEEEDV 256
           TP+  RW  P V+R+ K  E+ DV
Sbjct: 354 TPMPARWMAPEVMREGKCTEKSDV 377


>L03524-2|AAA28151.1|  488|Caenorhabditis elegans protein-tyrosine
           kinase protein.
          Length = 488

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -2

Query: 327 TPVARRWSRPSVLRKPKQEEEEDV 256
           TP+  RW  P V+R+ K  E+ DV
Sbjct: 358 TPMPARWMAPEVMREGKCTEKSDV 381


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,421,191
Number of Sequences: 27780
Number of extensions: 294259
Number of successful extensions: 543
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 530
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 543
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1851132448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)