Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1251
         (629 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC409.15 |||rRNA processing protein Tsr2 |Schizosaccharomyces ...    29   0.42 
SPAC13G7.10 |mug152||transcription factor |Schizosaccharomyces p...    29   0.73 
SPBC17A3.04c |||methionine-tRNA ligase |Schizosaccharomyces pomb...    27   3.0  
SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0 |Schizosacch...    26   3.9  
SPAC589.06c |||pho88 family protein|Schizosaccharomyces pombe|ch...    26   3.9  
SPBC17D1.02 |||diphthamide biosynthesis protein |Schizosaccharom...    26   3.9  
SPAC25G10.05c |his1||ATP phosphoribosyltransferase |Schizosaccha...    25   6.8  
SPAC664.10 |klp2||kinesin-like protein Klp2|Schizosaccharomyces ...    25   6.8  
SPCC1322.10 |||conserved fungal protein|Schizosaccharomyces pomb...    25   9.0  

>SPBC409.15 |||rRNA processing protein Tsr2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 179

 Score = 29.5 bits (63), Expect = 0.42
 Identities = 16/57 (28%), Positives = 27/57 (47%)
 Frame = +3

Query: 243 DVGDASDDEKDMSAADAEGVWSPDIEQSFQEALAIYPPCGRRKIILSDEGKMYGRNE 413
           +VG   DD   + A D   VW    E +++    I+   G ++++  +EGK   R E
Sbjct: 78  NVGSIEDDSPYILAQDLVNVWKAACEDNYEPIREIHERLG-KQLLEKEEGKEKTREE 133


>SPAC13G7.10 |mug152||transcription factor |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 390

 Score = 28.7 bits (61), Expect = 0.73
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +1

Query: 463 NKSRDTYRC*LGENYEKFKPNLKCNFG 543
           N  +D +R  L E+Y+KF PN K + G
Sbjct: 95  NDLKDRFRTILPEDYKKFYPNAKTHMG 121


>SPBC17A3.04c |||methionine-tRNA ligase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 782

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = -2

Query: 439 LSLIYLAINSFLPYILPSSERIILRRPQGGYIASASWKLCSMSG 308
           L+LIYL    F PY+  +S  I  +          +W+LC + G
Sbjct: 708 LNLIYLLAAIFYPYMPSTSTSIYKQLNAPAAAIPDTWELCLLPG 751


>SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 312

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 15/45 (33%), Positives = 21/45 (46%)
 Frame = -2

Query: 244 SRCLASAPPDPLVSGAPAGVLHGDAMVPAASAPLAIMEFEDEVKG 110
           ++   + P   +V+ APA    G+A  PAA A     E  DE  G
Sbjct: 263 TKAFLADPSAFVVAAAPAAAAGGEAEAPAAEAAAEEEEESDEDMG 307


>SPAC589.06c |||pho88 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 202

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 15/44 (34%), Positives = 24/44 (54%)
 Frame = +3

Query: 66  YSLNLVLN*HLDKIRPFTSSSNSIIASGALAAGTIASPWSTPAG 197
           Y+  LV+   L  I  FT++  SI      A G+++ P++ PAG
Sbjct: 116 YAQPLVIQSILPLISLFTNNLVSIYIFNKAAEGSLSRPFAPPAG 159


>SPBC17D1.02 |||diphthamide biosynthesis protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 503

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +3

Query: 225 ADAKHLDVGDASDDEKDMSAADAEGVWSP 311
           ADAK+ D   AS +++ M +    GV+SP
Sbjct: 424 ADAKNNDSSSASIEKRGMRSLAVNGVYSP 452


>SPAC25G10.05c |his1||ATP phosphoribosyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 310

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = -1

Query: 440 P*FNIPRY*LVPSVHLALVGENNFASSTGRVYRQRLLEALFDV 312
           P  +IPR+     VHL + G++  A +  R+  +  +E L D+
Sbjct: 58  PAADIPRFVGTGRVHLGITGQDQIAEARLRIGDKLKIEELVDL 100


>SPAC664.10 |klp2||kinesin-like protein Klp2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 817

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 18/68 (26%), Positives = 39/68 (57%), Gaps = 6/68 (8%)
 Frame = +3

Query: 102 KIRPFTSSSNSIIASGA--LAAGTI--ASPWSTPAGAPDTNGSGGADAKHL--DVGDASD 263
           K RPFT+SSN  +   A  +++ ++  +S +  PA A  ++ +   D + +  +  ++ +
Sbjct: 88  KARPFTASSNPRMPKSAHPISSRSVSASSHFGRPASAVSSSLNSSDDVRSMSDESMESYN 147

Query: 264 DEKDMSAA 287
           DEK ++A+
Sbjct: 148 DEKSVNAS 155


>SPCC1322.10 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 262

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 17/62 (27%), Positives = 31/62 (50%)
 Frame = +3

Query: 117 TSSSNSIIASGALAAGTIASPWSTPAGAPDTNGSGGADAKHLDVGDASDDEKDMSAADAE 296
           TSSS +  +S +  + + +S  STP  +  T+    + +  +    AS     +S+ADA+
Sbjct: 142 TSSSTATPSSSSTTSSSSSSSSSTPISSSITSSISSSASSSVSSSSAS-SSGSISSADAK 200

Query: 297 GV 302
            V
Sbjct: 201 TV 202


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,369,182
Number of Sequences: 5004
Number of extensions: 45171
Number of successful extensions: 137
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 279695522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)