Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-1250
(662 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC11E3.07 |vma4||V-type ATPase subunit E|Schizosaccharomyces p... 82 6e-17
SPBC3B9.09 |vps36||RBZ zinc finger protein Vps36|Schizosaccharom... 31 0.20
SPBC14C8.04 |||acetolactate synthase regulatory unit|Schizosacch... 28 1.0
SPBC215.10 |||haloacid dehalogenase-like hydrolase|Schizosacchar... 27 2.4
SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||M... 27 2.4
SPAC637.06 |||alpha-1,2-galactosyltransferase |Schizosaccharomyc... 26 5.6
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1... 26 5.6
SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 25 9.7
SPAC17C9.11c |||zinc finger protein, zf-C2H2 type/UBA domain pro... 25 9.7
>SPAC11E3.07 |vma4||V-type ATPase subunit E|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 227
Score = 82.2 bits (194), Expect = 6e-17
Identities = 51/183 (27%), Positives = 89/183 (48%), Gaps = 1/183 (0%)
Frame = +2
Query: 107 LSDADVQKQIKHMMAFIEQXXXXXXXXXXXXXXXXFNIEKGRLVQQQRLKIMXXXXXXXX 286
LSD VQ ++ M++FI+Q F +EK ++V++Q I
Sbjct: 3 LSDEQVQAEMHKMVSFIKQEALEKAKEIHTLSEEEFQVEKAKIVREQCDAIDQTYDMKLK 62
Query: 287 XXXXXXXIQSSNMLNQARLKVLKVREDHVRNVLDEARKRLAEVPKDTKLYSELLVTLIVQ 466
I SN+LN++RL++L ++ + ++ K+L + + Y++ + LIVQ
Sbjct: 63 RASMAQKIAKSNVLNKSRLEILNSKQKVIDDIFSRVEKKLDGIEQKKDAYTKFMADLIVQ 122
Query: 467 ALFQLMEPTVTIRVRQTDKALVESLLGKAQTDYKNKIKK-DVVLKVDTENFLSPDTCGGI 643
A+ L EP + RQ D +V++ + KA K+K D L +T++FL+ GG+
Sbjct: 123 AMELLGEPVGIVYSRQRDAEIVKAAIPKATEVLKSKNGSIDYELDAETDDFLNDSVLGGV 182
Query: 644 ELV 652
LV
Sbjct: 183 VLV 185
>SPBC3B9.09 |vps36||RBZ zinc finger protein
Vps36|Schizosaccharomyces pombe|chr 2|||Manual
Length = 467
Score = 30.7 bits (66), Expect = 0.20
Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Frame = -1
Query: 635 HRCRATKSS-RCRLSTQHPS*SYSCSLFGLFRAGTPPEPCR 516
H R +SS + RLS +H S++C + G P PCR
Sbjct: 77 HTSRYFRSSPKIRLSLRHVEKSWACKICTFINVGDPINPCR 117
>SPBC14C8.04 |||acetolactate synthase regulatory
unit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 289
Score = 28.3 bits (60), Expect = 1.0
Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Frame = +1
Query: 16 TSFPEPVINFLALYRPFFVLVVLKISSSHGAQRCRCSE-TDQAHD 147
T+ P+ V NFL+L RP+ VL + +S + +E T++A D
Sbjct: 233 TATPDRVDNFLSLLRPYGVLEACRTGTSAMTRAPHSNEVTEEAED 277
>SPBC215.10 |||haloacid dehalogenase-like
hydrolase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 302
Score = 27.1 bits (57), Expect = 2.4
Identities = 15/42 (35%), Positives = 24/42 (57%)
Frame = +2
Query: 365 DHVRNVLDEARKRLAEVPKDTKLYSELLVTLIVQALFQLMEP 490
D N L+EA+KRLA +P D E+ +T + F+++ P
Sbjct: 181 DDDTNGLEEAKKRLAGIPSD-----EVALTQALPQTFEIIPP 217
>SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1052
Score = 27.1 bits (57), Expect = 2.4
Identities = 28/93 (30%), Positives = 40/93 (43%), Gaps = 9/93 (9%)
Frame = +2
Query: 383 LDEARKRLAEVPKDTK-LYSELLVTLIVQALFQL---MEPTVTIRVR-----QTDKALVE 535
++EA K KD K L +L T+ + + +E T+TI V DK E
Sbjct: 745 VEEAEKDYQPSEKDDKSLIGGILSTVEMTQSTDVNDEIENTLTIPVEVEHSDNIDKGSEE 804
Query: 536 SLLGKAQTDYKNKIKKDVVLKVDTENFLSPDTC 634
+ LGK D N + DV+ V E + D C
Sbjct: 805 NDLGKEAVDEANNNQNDVLESVVVEQSTTTDDC 837
>SPAC637.06 |||alpha-1,2-galactosyltransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 347
Score = 25.8 bits (54), Expect = 5.6
Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = -2
Query: 661 PGC-NQLDSTTGVGRQKVLGVDFQHNILLDLILVVCLGF 548
PG N LDS G R+K H + + ++L++C G+
Sbjct: 22 PGTSNVLDSKEGDTRRKYFTKTHLHRLFVFVVLLLCSGY 60
>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1841
Score = 25.8 bits (54), Expect = 5.6
Identities = 17/49 (34%), Positives = 25/49 (51%)
Frame = -2
Query: 568 LVVCLGFSEQGLHQSLVGLTDADGDSGFHELEESLHNKCDQQL*VQFGV 422
L+V EQG ++ D+ +SG HE+ + L N DQQL Q +
Sbjct: 492 LIVACEELEQGFDLDIL---DSLRESGIHEVIQLLRNFPDQQLEKQLNI 537
>SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 780
Score = 25.0 bits (52), Expect = 9.7
Identities = 9/19 (47%), Positives = 11/19 (57%)
Frame = -2
Query: 106 RHGCCLFLTPLTRKTADIE 50
RHGCC+ L R DI+
Sbjct: 619 RHGCCILQRCLDRTNGDIQ 637
>SPAC17C9.11c |||zinc finger protein, zf-C2H2 type/UBA domain
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 240
Score = 25.0 bits (52), Expect = 9.7
Identities = 14/37 (37%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
Frame = +2
Query: 323 MLNQARLKVL-KVREDHVRNVLDEARKRLAEVPKDTK 430
M +QARL+ L K+R+ + ++ +K LAE+ +D K
Sbjct: 92 MQDQARLRDLQKIRQQKAEDA-EQRKKILAEIERDKK 127
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,477,779
Number of Sequences: 5004
Number of extensions: 45755
Number of successful extensions: 142
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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