Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-1250
(662 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0134 + 26805329-26805430,26807130-26807230,26807876-268080... 96 3e-20
05_05_0231 + 23488588-23488689,23488775-23488875,23489012-234891... 88 5e-18
01_01_0858 - 6699126-6699128,6699219-6699318,6700052-6700278,670... 82 4e-16
09_02_0115 + 4413714-4414475 32 0.47
03_04_0095 + 17266595-17266741,17267235-17267807 29 2.5
10_08_0762 - 20410681-20411834,20411999-20412098,20412200-204122... 29 3.3
12_02_0312 + 17395716-17398112 29 4.4
06_02_0090 + 11604017-11604082,11604345-11604397,11604710-11605229 29 4.4
11_06_0042 + 19550260-19550278,19550418-19550530,19551841-195520... 28 5.8
03_06_0108 + 31708713-31709079,31709258-31709822,31709933-317100... 28 5.8
>01_06_0134 +
26805329-26805430,26807130-26807230,26807876-26808032,
26808386-26808582,26809188-26809287,26809501-26809536
Length = 230
Score = 95.9 bits (228), Expect = 3e-20
Identities = 59/174 (33%), Positives = 91/174 (52%), Gaps = 1/174 (0%)
Frame = +2
Query: 107 LSDADVQKQIKHMMAFIEQXXXXXXXXXXXXXXXXFNIEKGRLVQQQRLKIMXXXXXXXX 286
++DADV KQI+ M+ FI Q FNIEK +LV+ ++ KI
Sbjct: 1 MNDADVAKQIQQMVRFIRQEAEEKASEISVSAEEEFNIEKLQLVEAEKKKIRQEYERKEK 60
Query: 287 XXXXXXXIQSSNMLNQARLKVLKVREDHVRNVLDEARKRLAEVPKDTKLYSELLVTLIVQ 466
I+ S LN +R+KVL+ ++D V ++ ++A K+L V + Y LL L+VQ
Sbjct: 61 QVEVRKKIEYSMQLNASRIKVLQAQDDLVNSMKEDATKQLLRVSHNHHEYKNLLKELVVQ 120
Query: 467 ALFQLMEPTVTIRVRQTDKALVESLLGKAQTDYKNKIK-KDVVLKVDTENFLSP 625
L +L EP V +R R+ D VES+L A+ +Y +K + + VD + +L P
Sbjct: 121 GLLRLKEPAVLLRCRKEDHHHVESVLHSAKNEYASKAEVHHPEILVDHDVYLPP 174
>05_05_0231 +
23488588-23488689,23488775-23488875,23489012-23489168,
23489365-23489594,23489696-23489795,23489878-23489916
Length = 242
Score = 88.2 bits (209), Expect = 5e-18
Identities = 60/185 (32%), Positives = 94/185 (50%), Gaps = 12/185 (6%)
Frame = +2
Query: 107 LSDADVQKQIKHMMAFIEQXXXXXXXXXXXXXXXXFNIEKGRLVQQQRLKIMXXXXXXXX 286
++DADV KQI+ M+ FI Q FNIEK +LV+ ++ +I
Sbjct: 1 MNDADVGKQIQQMVRFILQEAEEKASEISVAAEEEFNIEKLQLVESEKRRIRQDYERKAK 60
Query: 287 XXXXXXXIQSSNMLNQARLKVLKVREDHVRNVLDEARKRLAEVPKDTKLYSELLVTLIV- 463
I+ S LN AR+KVL+ ++ V + ++A K L V KD Y ++L LIV
Sbjct: 61 QVDVGRKIEYSTQLNAARIKVLRAQDGVVGEMKEDAGKSLLRVTKDATAYRKVLKGLIVQ 120
Query: 464 ----------QALFQLMEPTVTIRVRQTDKALVESLLGKAQTDYKNKIKKDV-VLKVDTE 610
Q+L +L EP+V +R R+ D+ VES+L A+ +Y K K ++ + +D +
Sbjct: 121 RKDSEIIDQIQSLLRLREPSVVLRCREADRGHVESVLEAAKKEYAEKAKVNLPKILIDGK 180
Query: 611 NFLSP 625
+L P
Sbjct: 181 VYLPP 185
>01_01_0858 -
6699126-6699128,6699219-6699318,6700052-6700278,
6701032-6701188,6701422-6701522,6702147-6702251
Length = 230
Score = 81.8 bits (193), Expect = 4e-16
Identities = 56/184 (30%), Positives = 88/184 (47%), Gaps = 11/184 (5%)
Frame = +2
Query: 107 LSDADVQKQIKHMMAFIEQXXXXXXXXXXXXXXXXFNIEKGRLVQQQRLKIMXXXXXXXX 286
++D DV +Q+K M FI Q F IEK +LV+ ++ +I
Sbjct: 2 MNDGDVARQLKQMTDFIRQEAVEKAAEIEAAAAEEFQIEKLQLVEAEKKRIRLEFERNEK 61
Query: 287 XXXXXXXIQSSNMLNQARLKVLKVREDHVRNVLDEARKRLAEVPKDTKLYSELLVTLIVQ 466
I+ S LN +RL+VL+ ++D ++L+ A K L + +D +Y LL IVQ
Sbjct: 62 QGDIKKKIEYSKQLNASRLEVLQAQDDLAMSMLEAAGKELLYITRDHHVYKNLLRIFIVQ 121
Query: 467 ----------ALFQLMEPTVTIRVRQTDKALVESLLGKAQTDYKNKIK-KDVVLKVDTEN 613
+L +L EP V +R R+ D+ LVES+L A+ +Y +K + VD
Sbjct: 122 DKLTKKNPEQSLLRLKEPAVILRCRKEDRELVESVLESAKNEYADKANIYPPEIMVDRNV 181
Query: 614 FLSP 625
+L P
Sbjct: 182 YLPP 185
>09_02_0115 + 4413714-4414475
Length = 253
Score = 31.9 bits (69), Expect = 0.47
Identities = 15/33 (45%), Positives = 18/33 (54%)
Frame = +1
Query: 436 LRAAGHTYCAGSLPAHGTHCHHPRPSNRQGSGG 534
LR H+ + SLP H HHPRP +GS G
Sbjct: 20 LRLFSHSSASASLPLLLGHFHHPRPVPPRGSPG 52
>03_04_0095 + 17266595-17266741,17267235-17267807
Length = 239
Score = 29.5 bits (63), Expect = 2.5
Identities = 20/69 (28%), Positives = 27/69 (39%), Gaps = 5/69 (7%)
Frame = +1
Query: 460 CAGSLPAHGTHCHHPRPSNRQGSGGVPARKSPNRLQE*DQEGCCVE-----SRHRELFVA 624
C G + HG H R ++ GV P + + + C + R RE
Sbjct: 150 CVG-VRLHGRRHPHRREAHGGSGSGVFIGGGPREVAQGETSSCARQHLLDGQRRRE--PK 206
Query: 625 RHLWWNRAG 651
RHLWW R G
Sbjct: 207 RHLWWQRGG 215
>10_08_0762 -
20410681-20411834,20411999-20412098,20412200-20412298,
20412563-20414133,20415080-20415128
Length = 990
Score = 29.1 bits (62), Expect = 3.3
Identities = 17/45 (37%), Positives = 27/45 (60%)
Frame = +2
Query: 335 ARLKVLKVREDHVRNVLDEARKRLAEVPKDTKLYSELLVTLIVQA 469
+RL++LK R+D++ N LD+A K+ E D + E V +QA
Sbjct: 826 SRLRILKCRDDNI-NSLDDAIKQHVEACTDQPNWDEDGVVAKIQA 869
>12_02_0312 + 17395716-17398112
Length = 798
Score = 28.7 bits (61), Expect = 4.4
Identities = 15/48 (31%), Positives = 27/48 (56%)
Frame = +2
Query: 308 IQSSNMLNQARLKVLKVREDHVRNVLDEARKRLAEVPKDTKLYSELLV 451
++ +N+ N L VLK+ D + + L L+ PKD +++ ELL+
Sbjct: 383 VKETNIPNTDILSVLKLSYDALPSDLRACFASLSTFPKDYEIFRELLI 430
>06_02_0090 + 11604017-11604082,11604345-11604397,11604710-11605229
Length = 212
Score = 28.7 bits (61), Expect = 4.4
Identities = 13/34 (38%), Positives = 14/34 (41%)
Frame = +1
Query: 454 TYCAGSLPAHGTHCHHPRPSNRQGSGGVPARKSP 555
T + P H CH RP R G VP SP
Sbjct: 131 TSLLAATPGHRRDCHRARPPPRPGGRLVPVAASP 164
>11_06_0042 +
19550260-19550278,19550418-19550530,19551841-19552051,
19552164-19552401,19552662-19552752,19552883-19552917,
19554179-19554452
Length = 326
Score = 28.3 bits (60), Expect = 5.8
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = +1
Query: 475 PAHGTHCHHPRPSNRQGSGGVPARKSPNRL 564
P+ C HP + R SGG A S NR+
Sbjct: 289 PSRPAFCMHPADATRTASGGETAAASANRV 318
>03_06_0108 +
31708713-31709079,31709258-31709822,31709933-31710015,
31710231-31710319,31710486-31710559,31710654-31710704,
31710807-31710883,31711454-31712031,31712388-31712555,
31713364-31713417,31713456-31713467,31713554-31713715
Length = 759
Score = 28.3 bits (60), Expect = 5.8
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +1
Query: 454 TYCAGSLPAHGTHCHHPRPSNRQGSGG 534
TYCAG + G H HH ++Q GG
Sbjct: 34 TYCAGGVDDVGHHHHHHVHQHQQQHGG 60
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,459,043
Number of Sequences: 37544
Number of extensions: 360763
Number of successful extensions: 1081
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1054
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1077
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1667659452
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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