Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1249
         (635 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0923 - 22617627-22617860,22618486-22618542,22618612-226187...    28   5.4  
06_01_1087 + 8901950-8902102,8902960-8903996,8904438-8904586,890...    28   7.1  

>07_03_0923 -
           22617627-22617860,22618486-22618542,22618612-22618768,
           22618875-22619014,22619642-22619777,22619874-22620142,
           22620272-22620492,22620648-22620707,22620859-22620915,
           22621008-22621405,22621929-22622000,22622098-22622169,
           22622246-22622317,22622574-22622645,22622738-22622867,
           22623065-22623170
          Length = 750

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = +3

Query: 441 R*PHSSTSFEAEIHLLQWSCSLQYSLKSVHILID 542
           R P+ S+   AE HL++W+ S  Y + ++  ++D
Sbjct: 597 RKPYDSSRPRAEQHLVRWATSQLYDIDAISKMVD 630


>06_01_1087 +
           8901950-8902102,8902960-8903996,8904438-8904586,
           8905437-8905690,8905785-8908799,8908889-8909001,
           8909975-8910164,8910399-8910512,8910591-8910698,
           8910941-8911073,8911206-8911408,8911626-8911826
          Length = 1889

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 16/33 (48%), Positives = 19/33 (57%)
 Frame = -3

Query: 543 NL*VCVQTSRNIAASNSTVINVFQPQNLLMNEV 445
           N   C  T+ NI   NS V  VF PQN+L N+V
Sbjct: 150 NAVTCFLTNFNIKLKNSYV--VFDPQNILDNKV 180


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,865,751
Number of Sequences: 37544
Number of extensions: 188549
Number of successful extensions: 379
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 372
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 379
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1561213104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)