Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-1249
(635 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AK128416-1|BAC87430.1| 303|Homo sapiens protein ( Homo sapiens ... 36 0.091
AK123631-1|BAC85667.1| 207|Homo sapiens protein ( Homo sapiens ... 24 0.87
AF217972-1|AAG17215.1| 139|Homo sapiens unknown protein. 26 1.1
AF217965-1|AAG17208.1| 139|Homo sapiens unknown protein. 26 1.1
AF238374-1|AAF97749.1| 174|Homo sapiens mutant fibroblast growt... 32 2.0
BC007301-1|AAH07301.1| 29|Homo sapiens PIGS protein protein. 26 2.0
AK021618-1|BAB13856.1| 121|Homo sapiens protein ( Homo sapiens ... 25 3.1
AK127601-1|BAC87052.1| 415|Homo sapiens protein ( Homo sapiens ... 25 7.8
AK093319-1|BAC04131.1| 142|Homo sapiens protein ( Homo sapiens ... 30 7.9
>AK128416-1|BAC87430.1| 303|Homo sapiens protein ( Homo sapiens
cDNA FLJ46559 fis, clone THYMU3040126. ).
Length = 303
Score = 36.3 bits (80), Expect = 0.091
Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = +2
Query: 476 NTFITVELLAAIFLEVCTHTHRF-CVCVCVCANQMTSRCL 592
+ ++ V + I + +C +TH + C CVCVC + T C+
Sbjct: 44 HVYVCVHIHICIHMYMCVYTHIYACTCVCVCVHTHTYTCI 83
>AK123631-1|BAC85667.1| 207|Homo sapiens protein ( Homo sapiens
cDNA FLJ41637 fis, clone FEBRA1000030, weakly similar
to T-CELL RECEPTOR BETA CHAIN ANA 11. ).
Length = 207
Score = 24.2 bits (50), Expect(3) = 0.87
Identities = 9/14 (64%), Positives = 9/14 (64%)
Frame = -1
Query: 587 IGLSFDWHTHTHTH 546
I L HTHTHTH
Sbjct: 71 ISLYIHTHTHTHTH 84
Score = 23.8 bits (49), Expect(3) = 0.87
Identities = 7/9 (77%), Positives = 8/9 (88%)
Frame = -1
Query: 566 HTHTHTHRI 540
HTHTHTH +
Sbjct: 80 HTHTHTHAV 88
Score = 22.2 bits (45), Expect(3) = 0.87
Identities = 7/13 (53%), Positives = 8/13 (61%)
Frame = -1
Query: 563 THTHTHRIYEYVY 525
THTHTH + Y
Sbjct: 93 THTHTHAVLTLAY 105
>AF217972-1|AAG17215.1| 139|Homo sapiens unknown protein.
Length = 139
Score = 26.2 bits (55), Expect(2) = 1.1
Identities = 8/15 (53%), Positives = 12/15 (80%)
Frame = +1
Query: 544 LCVCVCVCQSNDKPM 588
+CVCVCVC + +P+
Sbjct: 124 VCVCVCVCVFSPRPV 138
Score = 25.4 bits (53), Expect(2) = 1.1
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = +1
Query: 484 YYSGVARCNIP*SLYTYS*ILCVCVCVC 567
Y G+ N+P + +CVCVCVC
Sbjct: 103 YLQGLETANVP-LMGNPCVCVCVCVCVC 129
>AF217965-1|AAG17208.1| 139|Homo sapiens unknown protein.
Length = 139
Score = 26.2 bits (55), Expect(2) = 1.1
Identities = 8/15 (53%), Positives = 12/15 (80%)
Frame = +1
Query: 544 LCVCVCVCQSNDKPM 588
+CVCVCVC + +P+
Sbjct: 124 VCVCVCVCVFSPRPV 138
Score = 25.4 bits (53), Expect(2) = 1.1
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = +1
Query: 484 YYSGVARCNIP*SLYTYS*ILCVCVCVC 567
Y G+ N+P + +CVCVCVC
Sbjct: 103 YLQGLETANVP-LMGNPCVCVCVCVCVC 129
>AF238374-1|AAF97749.1| 174|Homo sapiens mutant fibroblast growth
factor receptor 3 protein.
Length = 174
Score = 31.9 bits (69), Expect = 2.0
Identities = 13/28 (46%), Positives = 14/28 (50%)
Frame = +2
Query: 518 EVCTHTHRFCVCVCVCANQMTSRCLLYR 601
E T + CVCVCVC TS C R
Sbjct: 68 ETATQSFGLCVCVCVCVCVCTSACACVR 95
>BC007301-1|AAH07301.1| 29|Homo sapiens PIGS protein protein.
Length = 29
Score = 26.2 bits (55), Expect(2) = 2.0
Identities = 8/9 (88%), Positives = 9/9 (100%)
Frame = +1
Query: 541 ILCVCVCVC 567
+LCVCVCVC
Sbjct: 2 VLCVCVCVC 10
Score = 24.6 bits (51), Expect(2) = 2.0
Identities = 8/10 (80%), Positives = 9/10 (90%)
Frame = +1
Query: 544 LCVCVCVCQS 573
+CVCVCVC S
Sbjct: 7 VCVCVCVCVS 16
>AK021618-1|BAB13856.1| 121|Homo sapiens protein ( Homo sapiens
cDNA FLJ11556 fis, clone HEMBA1003079. ).
Length = 121
Score = 25.4 bits (53), Expect(2) = 3.1
Identities = 8/13 (61%), Positives = 10/13 (76%)
Frame = +1
Query: 529 TYS*ILCVCVCVC 567
T+ + CVCVCVC
Sbjct: 66 TFEQVRCVCVCVC 78
Score = 24.6 bits (51), Expect(2) = 3.1
Identities = 8/10 (80%), Positives = 9/10 (90%)
Frame = +1
Query: 544 LCVCVCVCQS 573
+CVCVCVC S
Sbjct: 79 VCVCVCVCVS 88
>AK127601-1|BAC87052.1| 415|Homo sapiens protein ( Homo sapiens
cDNA FLJ45698 fis, clone FEBRA2017811. ).
Length = 415
Score = 24.6 bits (51), Expect(2) = 7.8
Identities = 10/14 (71%), Positives = 11/14 (78%)
Frame = -1
Query: 566 HTHTHTHRIYEYVY 525
H HTHTH I+ YVY
Sbjct: 346 HIHTHTH-IHIYVY 358
Score = 23.8 bits (49), Expect(2) = 7.8
Identities = 8/16 (50%), Positives = 10/16 (62%)
Frame = -1
Query: 593 TNIGLSFDWHTHTHTH 546
T+ + HTHTHTH
Sbjct: 293 THAHIHMHMHTHTHTH 308
>AK093319-1|BAC04131.1| 142|Homo sapiens protein ( Homo sapiens
cDNA FLJ36000 fis, clone TESTI2015180. ).
Length = 142
Score = 29.9 bits (64), Expect = 7.9
Identities = 13/25 (52%), Positives = 14/25 (56%)
Frame = +2
Query: 491 VELLAAIFLEVCTHTHRFCVCVCVC 565
V L +FL C T FC CVCVC
Sbjct: 66 VALGCGVFLCQCCMTVCFCFCVCVC 90
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 66,175,185
Number of Sequences: 237096
Number of extensions: 1125714
Number of successful extensions: 2906
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 2197
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2599
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6972732040
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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