Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1247
         (787 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC30.02c |||RNA polymerase II elongator complex subunit|Schizo...    27   3.0  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    27   4.0  
SPAC4G9.08c |rpc2||DNA-directed RNA polymerase III complex subun...    26   5.3  
SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces ...    25   9.3  
SPBC24C6.06 |gpa1||G-protein alpha subunit |Schizosaccharomyces ...    25   9.3  
SPAC3G9.09c |tif211||translation initiation factor eIF2 alpha su...    25   9.3  
SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr 1|...    25   9.3  

>SPAC30.02c |||RNA polymerase II elongator complex
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 281

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 14/47 (29%), Positives = 22/47 (46%)
 Frame = +2

Query: 398 VICDNLKYTEGFTSGTQRVIHSVYATTRSILDTTNPNTFCSRVSRDE 538
           VICD L Y +GF         S+Y TT  ++    P   C + + ++
Sbjct: 83  VICDALNYIKGFRYQLYCESKSMY-TTHCVIHVAVPQDLCRKFNSNK 128


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 12/50 (24%), Positives = 23/50 (46%)
 Frame = +2

Query: 539  LRFFDVTNARTRRGGVGDQLFNNYSGFLQNLIRRAVAPEYLQIDTEELRF 688
            L FF+  +    RGG+    F  ++  +QN     +A  + + D  +L +
Sbjct: 3826 LNFFETCSDSNERGGLESLFFKTHASNIQNFCTEVLANTHCEEDCLKLLY 3875


>SPAC4G9.08c |rpc2||DNA-directed RNA polymerase III complex subunit
           Rpc2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1165

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 9/38 (23%), Positives = 17/38 (44%)
 Frame = +2

Query: 20  MPVGMAPRQMRVNRCIFASIVSFDACITYKSPCSPDAY 133
           +P+G  P  +R N+C+ +     +     + P  P  Y
Sbjct: 155 VPIGRMPVMLRSNKCVLSGKNEMEMAALNECPLDPGGY 192


>SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1502

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 20/77 (25%), Positives = 36/77 (46%), Gaps = 5/77 (6%)
 Frame = +2

Query: 281  KRILIPSATNYQEVFNLNSMMQAEQLIFHLIYNNEEAVNVICDNLKYTEGFTSGTQRVIH 460
            KR+L+    N   VFN   +   +Q+   +   N +  +V CD   ++ GF     +++H
Sbjct: 1103 KRMLLDRKANVTNVFNTIGLPIHQQMAATIFLENLKEFSVYCD--AHSIGFL--VSKLLH 1158

Query: 461  SVY-----ATTRSILDT 496
              +      T RSI+D+
Sbjct: 1159 YEFYEVQLTTLRSIVDS 1175


>SPBC24C6.06 |gpa1||G-protein alpha subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 407

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
 Frame = +2

Query: 557 TNARTRRG-GVGDQLFNNYSGFLQNLIRRAVAPEYLQIDTEELRFRNSATCIIDETGLV 730
           T  RT +  G    L +N+  + Q+ I R   P+Y+  D + L  R   T I +ET L+
Sbjct: 174 TKLRTVQSCGTNLSLLDNFY-YYQDHIDRIFDPQYIPSDQDILHCRIKTTGISEETFLL 231


>SPAC3G9.09c |tif211||translation initiation factor eIF2 alpha
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 306

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 12/45 (26%), Positives = 23/45 (51%)
 Frame = -1

Query: 142 VVMIRVGRTRRLVCYARVERHDGRENAAVNSHLSRRHTHGH*RHI 8
           +V++ V + + +  Y ++  +D  E   + S LSRR      +HI
Sbjct: 19  LVVVNVRQIQEMGAYVKLLEYDNIEGMVLLSELSRRRIRSVQKHI 63


>SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1036

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 26/75 (34%), Positives = 38/75 (50%), Gaps = 3/75 (4%)
 Frame = +2

Query: 521 RVSRDE-LRFFDVTNARTRRGGVGDQLFNNYSGFLQNLIRRAVAPE--YLQIDTEELRFR 691
           R+S  E +RF+  T ARTR  G   Q F+N    +Q  I   V+ E  ++Q D  +  F 
Sbjct: 511 RISDPESIRFYSSTTARTRSAG---QPFDNE---VQTYIDTDVSSENPFIQFDHIDSSFV 564

Query: 692 NSATCIIDETGLVAS 736
             AT I  +T ++ S
Sbjct: 565 QLATYI--DTSMIPS 577


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,250,989
Number of Sequences: 5004
Number of extensions: 66174
Number of successful extensions: 179
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 179
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 381366860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)