Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1247
         (787 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0770 + 5912412-5912476,5913759-5913779,5914015-5914638,591...    30   1.8  
09_02_0235 + 6122145-6122206,6122408-6122417,6123515-6123549,612...    30   2.4  
09_04_0637 - 19153136-19153513,19153607-19153759,19153857-191546...    29   4.2  
07_03_1384 + 26177053-26177227,26178754-26178823,26179427-261794...    28   7.3  
07_01_0618 + 4577417-4577430,4577838-4577874,4578070-4578173,457...    28   7.3  
08_01_0947 + 9399366-9399568,9399683-9399855,9400745-9401130,940...    28   9.7  
06_03_0784 - 24557089-24557198,24557296-24560725                       28   9.7  

>07_01_0770 +
           5912412-5912476,5913759-5913779,5914015-5914638,
           5915264-5915439,5915526-5916124
          Length = 494

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 19/50 (38%), Positives = 29/50 (58%)
 Frame = -2

Query: 555 TSKKRNSSRDTREQNVFGFVVSRMLLVVA*TLCITRCVPLVKPSVYFRLS 406
           +S  R  SRD R +N+FGF VS +L+ +A    + R    + P+VY  +S
Sbjct: 18  SSTTRFMSRDIRAKNIFGFSVSLILINLA--SIMERADENLLPAVYKEVS 65


>09_02_0235 +
           6122145-6122206,6122408-6122417,6123515-6123549,
           6124422-6124842,6124978-6125412
          Length = 320

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 13/28 (46%), Positives = 19/28 (67%)
 Frame = +3

Query: 513 FVRVCRATNCVFST*PTPERVEVVLAIN 596
           FV V ++TNC+    P PE ++ VLAI+
Sbjct: 219 FVPVLQSTNCLMEPLPIPEPIKEVLAIS 246


>09_04_0637 -
           19153136-19153513,19153607-19153759,19153857-19154675,
           19155068-19155174,19155434-19155548
          Length = 523

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 19/77 (24%), Positives = 33/77 (42%), Gaps = 1/77 (1%)
 Frame = +2

Query: 311 YQEVFNLNSMMQAEQLIFHLI-YNNEEAVNVICDNLKYTEGFTSGTQRVIHSVYATTRSI 487
           YQE     S+ ++   +  +  Y++E   +V        +     T  ++ +  +  R  
Sbjct: 400 YQESMEHESIFESSSHLRQMPEYHHEHLKSVTISGFCSAKSLVELTCHIVENTTSLERLE 459

Query: 488 LDTTNPNTFCSRVSRDE 538
           LDTT+ N  CS  S DE
Sbjct: 460 LDTTHGNARCSEDSSDE 476


>07_03_1384 +
           26177053-26177227,26178754-26178823,26179427-26179469,
           26179888-26179965,26180010-26180027,26180103-26180187,
           26180273-26180355,26180489-26180546,26181258-26181368,
           26181769-26181826,26182005-26182101,26182585-26182620,
           26183107-26183137,26183993-26184046,26184159-26184301,
           26184411-26184560,26185084-26185317,26185450-26185509,
           26185974-26186204,26186829-26186981
          Length = 655

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 8/29 (27%), Positives = 17/29 (58%)
 Frame = -1

Query: 754 LGAVGHRRHQTRFVNYTRGAISKSQFLRV 668
           +G  GH +   +F+ +  G  +KS+F ++
Sbjct: 297 IGKSGHHKEMWKFIQFIEGTFTKSEFTKI 325


>07_01_0618 +
           4577417-4577430,4577838-4577874,4578070-4578173,
           4578512-4578707,4579559-4579628,4579849-4579952,
           4580296-4580335,4581016-4581070,4581418-4581426,
           4582026-4582157,4582544-4582613,4583029-4583086,
           4583173-4583228,4583315-4583470,4583589-4583700,
           4583782-4583923,4584141-4584216,4584306-4584401,
           4584509-4584637
          Length = 551

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -1

Query: 727 QTRFVNYTRGAISKSQFLRVDLQVLGR 647
           Q RF+NY    ++  QFL++  Q+ GR
Sbjct: 313 QKRFINYLVNQLAAHQFLKIACQIEGR 339


>08_01_0947 +
           9399366-9399568,9399683-9399855,9400745-9401130,
           9401791-9402090,9402177-9402266,9403213-9403336,
           9403452-9403615,9404572-9404802
          Length = 556

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -2

Query: 768 IGLYNSGPSGTDATRPVSSIIHV 700
           +GLYN GPS  D   P+S+   V
Sbjct: 81  LGLYNDGPSRNDTQSPLSNFFGV 103


>06_03_0784 - 24557089-24557198,24557296-24560725
          Length = 1179

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 20/78 (25%), Positives = 35/78 (44%), Gaps = 2/78 (2%)
 Frame = +2

Query: 92  ACITYKSPCSPDAYHDDGWFICNSHLIKRFKMSKMVLPIFDE--DDNQFKMTIARHLVGN 265
           A + Y      D Y    W IC SH+  + +++K +L   D+  D   F  ++ +  + N
Sbjct: 228 AQLIYNDKRIEDNYDLRAW-ICVSHVFDKVRITKEILTSIDKTIDLTNFNFSMLQEELKN 286

Query: 266 KERGIKRILIPSATNYQE 319
           K +  K +L+     Y E
Sbjct: 287 KVKMKKFLLVLDDVWYDE 304


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,566,114
Number of Sequences: 37544
Number of extensions: 440047
Number of successful extensions: 1189
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1189
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2115411120
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)