Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1245
         (712 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024809-3|AAF59541.3|  455|Caenorhabditis elegans Hypothetical ...    30   1.9  
AC024794-1|AAK68497.1|  994|Caenorhabditis elegans Hypothetical ...    29   4.3  
U40415-10|AAK39254.1|  215|Caenorhabditis elegans Dnaj domain (p...    28   5.7  

>AC024809-3|AAF59541.3|  455|Caenorhabditis elegans Hypothetical
           protein Y53G8AR.8 protein.
          Length = 455

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 18/55 (32%), Positives = 26/55 (47%)
 Frame = +2

Query: 227 LRSKREITLVDGVTLDSKGSPRSARALEPLPEEPKAREAQVESRLVDGVADFLEN 391
           L  + E+ L D V  D K  PR  R    LPE  ++R    +++ +    DF EN
Sbjct: 393 LEHEAELNLTDNVITDPKMLPRGKRPEFELPEH-RSRLEDAKAQFLKEFGDFEEN 446


>AC024794-1|AAK68497.1|  994|Caenorhabditis elegans Hypothetical
           protein Y48G1BM.5 protein.
          Length = 994

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = -3

Query: 134 CSGQSLVRQQASPTPRRSPLKRPDTSYRPFRTTLWKANT 18
           CS  + +R+  S T R S    P T+ R   TT+W   T
Sbjct: 588 CSHATTIRRATSTTTRTSRTGVPTTTSRSCSTTIWTTAT 626


>U40415-10|AAK39254.1|  215|Caenorhabditis elegans Dnaj domain
           (prokaryotic heat shockprotein) protein 14 protein.
          Length = 215

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
 Frame = +2

Query: 104 PAAEQDSDPNI---LGSVLGVVKECVDGDVTLCLKEKALRY 217
           PAA+   DP     L +VLG+ K   D ++    ++ ALRY
Sbjct: 25  PAADHSHDPKKGLHLYNVLGIQKNATDDEIKKAYRKLALRY 65


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,282,879
Number of Sequences: 27780
Number of extensions: 238552
Number of successful extensions: 976
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 885
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 964
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1655655746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)