Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-1244
(489 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAP8A3.09c |paa1||protein phosphatase regulatory subunit Paa1|S... 137 7e-34
SPBC119.07 |ppk19||serine/threonine protein kinase Ppk19|Schizos... 42 7e-05
SPAC2F3.06c |kap104||karyopherin Kap104|Schizosaccharomyces pomb... 29 0.50
SPBC14F5.03c |kap123||karyopherin Kap123|Schizosaccharomyces pom... 28 0.87
SPCC132.04c |||NAD-dependent glutamate dehydrogenase |Schizosacc... 27 2.0
SPAC3G9.11c |||pyruvate decarboxylase |Schizosaccharomyces pombe... 26 3.5
SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit Smc6|Schizosac... 25 6.1
SPBC2G5.05 |||transketolase |Schizosaccharomyces pombe|chr 2|||M... 25 6.1
SPBC3B8.09 |||U3 snoRNP-associated protein Utp3 |Schizosaccharom... 25 6.1
SPBC1703.15c |vps33|SPBC2A9.01c|vacuolar sorting protein Vps33|S... 25 6.1
SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces ... 25 8.1
SPAC30.03c |tsn1|tsn, mug90|translin|Schizosaccharomyces pombe|c... 25 8.1
SPCC74.02c |||mRNA cleavage and polyadenylation specificity fact... 25 8.1
>SPAP8A3.09c |paa1||protein phosphatase regulatory subunit
Paa1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 590
Score = 137 bits (332), Expect = 7e-34
Identities = 70/151 (46%), Positives = 101/151 (66%)
Frame = +1
Query: 37 DMEQHVMPTVRARAGDTSWRVRYMVADKFVELQQAVGPELARTDLAQIFQALLKDSEAEV 216
++ +++ +R+ D+SWR RYMVA FV+L + VGP L + +L + F L+KD+E EV
Sbjct: 241 EIRHYLLQPLRSFVSDSSWRTRYMVAANFVKLAKVVGPSLIKDELIKPFVLLMKDTEQEV 300
Query: 217 RAAAAGKVKDFCMNLDKAHQEHIIMTMILPQIKDLVCDANQHVKSALASVIMGLSPIVGR 396
R A A ++ FC LDK I++ I+P I++L+ D QHV++AL I L+P +G+
Sbjct: 301 RRAIATQIPGFCELLDK----RIVLEEIIPVIQELINDPAQHVRAALGMNIGALAPQLGK 356
Query: 397 QNTIEHLLPLFLTQLKDECPEVRLNIISNLE 489
+ T E+LLP+FL LKDE PEVRLNIIS LE
Sbjct: 357 EKTTEYLLPMFLELLKDENPEVRLNIISKLE 387
Score = 44.8 bits (101), Expect = 7e-06
Identities = 33/132 (25%), Positives = 57/132 (43%)
Frame = +1
Query: 82 DTSWRVRYMVADKFVELQQAVGPELARTDLAQIFQALLKDSEAEVRAAAAGKVKDFCMNL 261
DT VR +A + + + + ++ + Q L+ D VRAA + L
Sbjct: 295 DTEQEVRRAIATQIPGFCELLDKRIVLEEIIPVIQELINDPAQHVRAALGMNIGALAPQL 354
Query: 262 DKAHQEHIIMTMILPQIKDLVCDANQHVKSALASVIMGLSPIVGRQNTIEHLLPLFLTQL 441
K ++ M L +KD N V+ + S + ++ +VG + + LLP +T
Sbjct: 355 GKEKTTEYLLPMFLELLKD----ENPEVRLNIISKLEVVNKVVGIELLSQSLLPAIVTLA 410
Query: 442 KDECPEVRLNII 477
+D+ VRL II
Sbjct: 411 EDKQWRVRLAII 422
Score = 44.8 bits (101), Expect = 7e-06
Identities = 32/154 (20%), Positives = 59/154 (38%)
Frame = +1
Query: 28 GTRDMEQHVMPTVRARAGDTSWRVRYMVADKFVELQQAVGPELARTDLAQIFQALLKDSE 207
G + Q ++P + A D WRVR + D L Q +G E + + + L+D
Sbjct: 394 GIELLSQSLLPAIVTLAEDKQWRVRLAIIDYIPLLAQQLGVEFFNEKMGNLCMSWLEDHV 453
Query: 208 AEVRAAAAGKVKDFCMNLDKAHQEHIIMTMILPQIKDLVCDANQHVKSALASVIMGLSPI 387
+R AA ++ L + I+P+ + N + I ++P
Sbjct: 454 YSIREAAIKNLR----KLTEIFGLEWATETIIPKFLAMRSHPNYLYRMTTIFAISEIAPA 509
Query: 388 VGRQNTIEHLLPLFLTQLKDECPEVRLNIISNLE 489
+ + + +LP + D P +R N+ E
Sbjct: 510 LNAEVIEKQILPTLEQLVNDPIPNIRFNVAKAFE 543
Score = 27.9 bits (59), Expect = 0.87
Identities = 29/122 (23%), Positives = 50/122 (40%), Gaps = 1/122 (0%)
Frame = +1
Query: 106 MVADKFVELQQAVGPELARTDLAQIFQALLKD-SEAEVRAAAAGKVKDFCMNLDKAHQEH 282
+V DK V+ V L++ L Q F L++ S AE + A +C ++ +
Sbjct: 103 VVRDKAVDSLNKVCICLSQEQLEQYFVPLVQRLSTAEWFTSRASSAGLYCAAYSQS-ENP 161
Query: 283 IIMTMILPQIKDLVCDANQHVKSALASVIMGLSPIVGRQNTIEHLLPLFLTQLKDECPEV 462
+ + L D V+ A+ +V +Q I+ +PLF + D+ V
Sbjct: 162 AVKVSLRQSFSHLCHDEAPMVRRPAATNCAKFVFLVTKQEAIDEFIPLFNSLSNDDQDSV 221
Query: 463 RL 468
RL
Sbjct: 222 RL 223
>SPBC119.07 |ppk19||serine/threonine protein kinase
Ppk19|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1706
Score = 41.5 bits (93), Expect = 7e-05
Identities = 26/98 (26%), Positives = 48/98 (48%)
Frame = +1
Query: 190 LLKDSEAEVRAAAAGKVKDFCMNLDKAHQEHIIMTMILPQIKDLVCDANQHVKSALASVI 369
LL DS + VR + + C+ KA +I++ ++ + D + ++ A I
Sbjct: 600 LLADSSSIVRRSLLNALAPLCVFFGKAKSNDLILSHLITYLND----TDWMLRCAFFESI 655
Query: 370 MGLSPIVGRQNTIEHLLPLFLTQLKDECPEVRLNIISN 483
GLS +G ++ E++LPL L L D P V +++ +
Sbjct: 656 TGLSIFIGPRSVDEYILPLMLQALVDPEPAVLESVLGS 693
Score = 29.1 bits (62), Expect = 0.38
Identities = 23/96 (23%), Positives = 38/96 (39%)
Frame = +1
Query: 82 DTSWRVRYMVADKFVELQQAVGPELARTDLAQIFQALLKDSEAEVRAAAAGKVKDFCMNL 261
DT W +R + L +GP + + L D E V + G F +
Sbjct: 642 DTDWMLRCAFFESITGLSIFIGPRSVDEYILPLMLQALVDPEPAVLESVLG---SFSGLI 698
Query: 262 DKAHQEHIIMTMILPQIKDLVCDANQHVKSALASVI 369
+ E +++ IL + LV N +++ A SVI
Sbjct: 699 ELHLFEKLVVVDILQLVLPLVAVPNAYIRRAALSVI 734
Score = 25.8 bits (54), Expect = 3.5
Identities = 14/62 (22%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Frame = +1
Query: 295 MILPQIKDLVCDAN-QHVKSALASVIMGLSPIVGRQNTIEHLLPLFLTQLKDECPEVRLN 471
++LP + + N + K S++ LS + ++ ++ +LP +T L+D+ +VR++
Sbjct: 431 VLLPIVLSTIRHVNTRESKINALSLVQILSRNICDESKLDTVLPFVMTLLRDQYADVRIS 490
Query: 472 II 477
+
Sbjct: 491 AL 492
>SPAC2F3.06c |kap104||karyopherin Kap104|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 910
Score = 28.7 bits (61), Expect = 0.50
Identities = 23/68 (33%), Positives = 28/68 (41%), Gaps = 2/68 (2%)
Frame = +1
Query: 58 PTVRARAGDTSWRVRYMVADKFVELQQAVGPELARTD--LAQIFQALLKDSEAEVRAAAA 231
PTV D +V+ L V P LA+ D L QI KD EVR +A
Sbjct: 651 PTVDVPDRDFLVTTLDLVSGIIQALGSQVSPLLAQADPPLGQIIGICAKDEVPEVRQSAY 710
Query: 232 GKVKDFCM 255
+ D CM
Sbjct: 711 ALLGDMCM 718
>SPBC14F5.03c |kap123||karyopherin Kap123|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1067
Score = 27.9 bits (59), Expect = 0.87
Identities = 27/96 (28%), Positives = 50/96 (52%), Gaps = 4/96 (4%)
Frame = +1
Query: 166 DLAQIFQALLKDSEAEVRAAAAGKVKDFC-MNLDKAHQEHIIMTMILPQIKDLVCDANQH 342
D+ +F A L+DSE EVR+ AA + C + + E++ IL +++ +
Sbjct: 894 DVFSLFMAALEDSEGEVRSNAAYSMGLLCQFSTEDLSSEYL---NILQKLQPFF--TQEV 948
Query: 343 VKSALASVIMGLSP-IVGRQNTI--EHLLPLFLTQL 441
++AL + I +S I+ QN I + +LP+ ++L
Sbjct: 949 FRTALDNAIGCISRLILHNQNAIPVDQVLPIVFSKL 984
>SPCC132.04c |||NAD-dependent glutamate dehydrogenase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1106
Score = 26.6 bits (56), Expect = 2.0
Identities = 9/42 (21%), Positives = 20/42 (47%)
Frame = -2
Query: 419 RRCSIVFCLPTMGLRPMMTEARADLTCWLASHTKSLICGKIM 294
R S+++CLP+ +P+ + + +H + C +M
Sbjct: 387 REASLLYCLPSTDFQPLFVSEKLSIQEVTYAHCVRIFCEHVM 428
>SPAC3G9.11c |||pyruvate decarboxylase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 570
Score = 25.8 bits (54), Expect = 3.5
Identities = 10/30 (33%), Positives = 18/30 (60%)
Frame = -1
Query: 321 QVLDLWQDHGHDDVFLMSFIQVHTEVLDLP 232
++LDL++D ++ ++VH VLD P
Sbjct: 525 ELLDLFKDEEFGKADVIQLVEVHMPVLDAP 554
>SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit
Smc6|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1140
Score = 25.0 bits (52), Expect = 6.1
Identities = 14/47 (29%), Positives = 24/47 (51%)
Frame = +1
Query: 241 KDFCMNLDKAHQEHIIMTMILPQIKDLVCDANQHVKSALASVIMGLS 381
++F L HQE + + P ++L N+H KS ++ + GLS
Sbjct: 1001 RNFTGKLVIKHQEEFLEPRVYPANRNLATAHNRHEKSKVS--VQGLS 1045
>SPBC2G5.05 |||transketolase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 685
Score = 25.0 bits (52), Expect = 6.1
Identities = 12/33 (36%), Positives = 16/33 (48%)
Frame = +1
Query: 286 IMTMILPQIKDLVCDANQHVKSALASVIMGLSP 384
I T+ + I+ L D H KS MGL+P
Sbjct: 9 IDTLAINTIRTLAVDTTAHAKSGHPGAPMGLAP 41
>SPBC3B8.09 |||U3 snoRNP-associated protein Utp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 597
Score = 25.0 bits (52), Expect = 6.1
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = +1
Query: 127 ELQQAVGPELARTDLAQIFQA 189
EL Q + P+L RT+L +I +A
Sbjct: 191 ELVQQISPDLPRTELLKILEA 211
>SPBC1703.15c |vps33|SPBC2A9.01c|vacuolar sorting protein
Vps33|Schizosaccharomyces pombe|chr 2|||Manual
Length = 592
Score = 25.0 bits (52), Expect = 6.1
Identities = 16/61 (26%), Positives = 27/61 (44%)
Frame = +1
Query: 169 LAQIFQALLKDSEAEVRAAAAGKVKDFCMNLDKAHQEHIIMTMILPQIKDLVCDANQHVK 348
L++I + L D E +A +++DF L EH + + + LV QH K
Sbjct: 294 LSKIARKLSSDFEGRRQAKTVNQIRDFVSKLGSLQSEHTSLNIHTGLAETLV----QHTK 349
Query: 349 S 351
+
Sbjct: 350 N 350
>SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 582
Score = 24.6 bits (51), Expect = 8.1
Identities = 10/35 (28%), Positives = 18/35 (51%)
Frame = +3
Query: 336 PTRQVCPSLRHHGPEPHSGQTEHY*TSPAAVPHTT 440
P+ CPS++ GP H+ Q + + +P T+
Sbjct: 314 PSNCSCPSVKSSGPSYHAEQEVNVNSYNGGIPSTS 348
>SPAC30.03c |tsn1|tsn, mug90|translin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 236
Score = 24.6 bits (51), Expect = 8.1
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = -1
Query: 447 ILQLCEEQRQEMFNSVLSAHY 385
+L LC E ++ NSV+S +Y
Sbjct: 162 VLSLCSELARQSVNSVISGNY 182
>SPCC74.02c |||mRNA cleavage and polyadenylation specificity factor
complex associated protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 710
Score = 24.6 bits (51), Expect = 8.1
Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Frame = +1
Query: 343 VKSALASVIMGLSPIVGRQNTI-EHLLPLFLTQLKDECPEVRLNIISNL 486
+KS I P+ + T+ E L P+ + Q EC + +N++SN+
Sbjct: 177 LKSKSRQKISSSDPLEDLRLTLTECLNPINIVQAPKECAAILVNLMSNI 225
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,917,657
Number of Sequences: 5004
Number of extensions: 33712
Number of successful extensions: 135
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 190087364
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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