Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-1244
(489 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_02_0058 - 3704138-3704257,3704355-3704421,3704502-3704641,370... 159 1e-39
03_05_0944 + 29046793-29046922,29048091-29048464,29048556-290486... 40 0.001
03_05_0327 - 23154014-23154942,23155169-23155316,23155606-231566... 36 0.017
09_04_0693 - 19518331-19518426,19518541-19518705,19518811-195188... 29 1.5
04_04_0339 - 24513699-24516827 27 6.1
11_02_0051 + 7776312-7780228,7780627-7780695,7781920-7781979,778... 27 8.1
09_06_0279 + 22001589-22002237,22002909-22004044,22006050-220070... 27 8.1
03_06_0722 - 35751490-35754357 27 8.1
>09_02_0058 -
3704138-3704257,3704355-3704421,3704502-3704641,
3705332-3705424,3705927-3706109,3706491-3706595,
3706738-3706818,3706905-3707046,3707207-3707286,
3707456-3707568,3708051-3708297,3708659-3709051
Length = 587
Score = 159 bits (386), Expect = 1e-39
Identities = 82/163 (50%), Positives = 111/163 (68%)
Frame = +1
Query: 1 GMCCCGFSAGTRDMEQHVMPTVRARAGDTSWRVRYMVADKFVELQQAVGPELARTDLAQI 180
G G +D H++P + + D SWRVRYMVA++ EL +AVGPE +R L
Sbjct: 225 GCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEHSREQLVPA 284
Query: 181 FQALLKDSEAEVRAAAAGKVKDFCMNLDKAHQEHIIMTMILPQIKDLVCDANQHVKSALA 360
+ LL+D+EAEVR AAAGKV FC L + + ILP +K+L D++QHV+SALA
Sbjct: 285 YVRLLRDNEAEVRIAAAGKVTKFCRILSP----QLAIQHILPCVKELSSDSSQHVRSALA 340
Query: 361 SVIMGLSPIVGRQNTIEHLLPLFLTQLKDECPEVRLNIISNLE 489
SVIMG++P++G++ TIE LLP+FL+ LKDE P+VRLNIIS L+
Sbjct: 341 SVIMGMAPVLGKEATIEQLLPIFLSLLKDEFPDVRLNIISKLD 383
Score = 59.7 bits (138), Expect = 1e-09
Identities = 36/150 (24%), Positives = 67/150 (44%)
Frame = +1
Query: 40 MEQHVMPTVRARAGDTSWRVRYMVADKFVELQQAVGPELARTDLAQIFQALLKDSEAEVR 219
+ Q ++P + A D WRVR + + L +G L + L+D +R
Sbjct: 394 LSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLEDKVFSIR 453
Query: 220 AAAAGKVKDFCMNLDKAHQEHIIMTMILPQIKDLVCDANQHVKSALASVIMGLSPIVGRQ 399
AAA +K L + M I+PQ+ + + + + + + I L+P++G +
Sbjct: 454 DAAANNLK----RLAEEFGPEWAMQHIIPQVLEKINNPHYLYRMTILQAISLLAPVMGAE 509
Query: 400 NTIEHLLPLFLTQLKDECPEVRLNIISNLE 489
T + LLP+ + KD P ++ N+ L+
Sbjct: 510 ITCQQLLPVVINSSKDRVPNIKFNVAKVLQ 539
Score = 41.5 bits (93), Expect = 4e-04
Identities = 36/152 (23%), Positives = 60/152 (39%)
Frame = +1
Query: 22 SAGTRDMEQHVMPTVRARAGDTSWRVRYMVADKFVELQQAVGPELARTDLAQIFQALLKD 201
+ G + ++P D VR A K + + + P+LA + + L D
Sbjct: 271 AVGPEHSREQLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILSPQLAIQHILPCVKELSSD 330
Query: 202 SEAEVRAAAAGKVKDFCMNLDKAHQEHIIMTMILPQIKDLVCDANQHVKSALASVIMGLS 381
S VR+A A + L K ++ + L +KD D ++ S L V +
Sbjct: 331 SSQHVRSALASVIMGMAPVLGKEATIEQLLPIFLSLLKDEFPDVRLNIISKLDQV----N 386
Query: 382 PIVGRQNTIEHLLPLFLTQLKDECPEVRLNII 477
++G + LLP + +D VRL II
Sbjct: 387 QVIGIDLLSQSLLPAIVELAEDRHWRVRLAII 418
>03_05_0944 + 29046793-29046922,29048091-29048464,29048556-29048687,
29048829-29049210,29049370-29049513,29049593-29049777,
29049925-29050051,29050603-29050676,29051071-29051147,
29051256-29051292,29051453-29051619,29051800-29051983,
29052053-29052130,29052451-29052570,29052648-29052707,
29053057-29053179,29053848-29053941,29054019-29054197,
29054737-29055039,29055373-29055474,29055553-29055693,
29055831-29055995,29056168-29056344,29056432-29056554,
29057787-29057867,29057983-29058099,29058214-29058386,
29058846-29058923,29058994-29059141,29059755-29059877,
29060015-29060071,29060145-29060255,29060382-29060573,
29060690-29060863,29061263-29061373,29061462-29061531,
29061734-29061812,29061898-29062000,29062086-29062256,
29062348-29062470,29062548-29062661,29062935-29063041,
29063117-29063168,29063245-29063351,29063589-29063703,
29063819-29063929,29064016-29064153,29064230-29064352,
29064535-29064606,29064774-29064886,29066780-29067110,
29067199-29067381,29068669-29068863,29068943-29069110,
29069208-29069340,29069511-29069595,29069726-29069765
Length = 2591
Score = 39.9 bits (89), Expect = 0.001
Identities = 32/133 (24%), Positives = 57/133 (42%)
Frame = +1
Query: 52 VMPTVRARAGDTSWRVRYMVADKFVELQQAVGPELARTDLAQIFQALLKDSEAEVRAAAA 231
+M T+ + +S R + EL + +G E + I LKD +A R
Sbjct: 1846 LMDTLISSLASSSSERRQVAGRSLGELVRKLG-ERVLPSIIPILSQGLKDPDASRRQGVC 1904
Query: 232 GKVKDFCMNLDKAHQEHIIMTMILPQIKDLVCDANQHVKSALASVIMGLSPIVGRQNTIE 411
+ + + K HQ M +++P I+ +CD+ Q V+ + L G Q I+
Sbjct: 1905 IGLSEVMGSAGK-HQLLSFMDLLIPTIRTALCDSTQEVRESAGLAFSTLYKSAGLQ-AID 1962
Query: 412 HLLPLFLTQLKDE 450
++P L L+D+
Sbjct: 1963 EIVPTLLRALEDD 1975
>03_05_0327 -
23154014-23154942,23155169-23155316,23155606-23156622,
23156753-23157217,23160258-23161247
Length = 1182
Score = 35.9 bits (79), Expect = 0.017
Identities = 27/102 (26%), Positives = 48/102 (47%)
Frame = +1
Query: 169 LAQIFQALLKDSEAEVRAAAAGKVKDFCMNLDKAHQEHIIMTMILPQIKDLVCDANQHVK 348
L++I + KDS EVR + + LD Q H I+ ++LP++ D+V D V+
Sbjct: 410 LSKIVDDISKDSCTEVRVST---INGLIYLLDNP-QSHEILKVLLPRLSDMVSDPALSVR 465
Query: 349 SALASVIMGLSPIVGRQNTIEHLLPLFLTQLKDECPEVRLNI 474
S+ +++ + + Q L L+ L ++ P V I
Sbjct: 466 SSAVDLLLAIRDLRSFQFNKVVGLGTLLSSLSNDHPRVAQKI 507
>09_04_0693 -
19518331-19518426,19518541-19518705,19518811-19518894,
19518986-19519054,19519176-19519241,19519347-19519484,
19519636-19519866
Length = 282
Score = 29.5 bits (63), Expect = 1.5
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = -1
Query: 471 VESDFGTFILQLCEEQRQEMFNSVLSAHY 385
+ D G++I+Q E RQE+FN V+ +Y
Sbjct: 249 LSQDNGSYIMQTVGEPRQELFNQVVLNNY 277
>04_04_0339 - 24513699-24516827
Length = 1042
Score = 27.5 bits (58), Expect = 6.1
Identities = 14/46 (30%), Positives = 26/46 (56%)
Frame = -1
Query: 330 ITHQVLDLWQDHGHDDVFLMSFIQVHTEVLDLPSSCGSNLSLRVLE 193
++H +++ D + FL +F TE+ +LP S G +L+VL+
Sbjct: 592 LSHNDIEIIPDSICNLQFLKNFNLSRTEIAELPESVGKMQALQVLD 637
>11_02_0051 +
7776312-7780228,7780627-7780695,7781920-7781979,
7782225-7782324,7782720-7782801,7782928-7782940,
7783621-7783681
Length = 1433
Score = 27.1 bits (57), Expect = 8.1
Identities = 12/36 (33%), Positives = 22/36 (61%)
Frame = -1
Query: 282 VFLMSFIQVHTEVLDLPSSCGSNLSLRVLEQCLEDL 175
++ + F++VH +V +LP+ + LR LE+C L
Sbjct: 635 LYHLQFLRVHRDVNNLPAKICNLSKLRHLERCSPSL 670
>09_06_0279 +
22001589-22002237,22002909-22004044,22006050-22007058,
22007129-22007301,22007730-22008785
Length = 1340
Score = 27.1 bits (57), Expect = 8.1
Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Frame = -1
Query: 126 YELISDHVPHPPRSISGTSPHGRH-HMLLHISGASREATT 10
++L +H PP I S GRH LL +S A EA T
Sbjct: 666 FQLECNHTSSPPLLIVSNSTGGRHRQQLLSLSLADGEART 705
>03_06_0722 - 35751490-35754357
Length = 955
Score = 27.1 bits (57), Expect = 8.1
Identities = 15/44 (34%), Positives = 21/44 (47%)
Frame = -2
Query: 146 PTACCSSTNLSATMYRTLHEVSPARARTVGITCCSISRVPAEKP 15
P A ++ TLH ++PAR R T + + VPA KP
Sbjct: 74 PAATVRQARTASPAAATLHRLTPARDRLKSSTAVA-AAVPAPKP 116
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,804,124
Number of Sequences: 37544
Number of extensions: 267006
Number of successful extensions: 839
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 811
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 836
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1011709100
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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