Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-1243
(743 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024780-6|AAF60569.1| 259|Caenorhabditis elegans Ribosomal pro... 320 7e-88
AL132948-1|CAC51077.1| 735|Caenorhabditis elegans Hypothetical ... 39 0.003
AF125964-1|AAD14753.1| 471|Caenorhabditis elegans Hypothetical ... 33 0.16
U97189-1|AAC48164.1| 623|Caenorhabditis elegans Hypothetical pr... 30 2.0
Z81579-4|CAE17915.1| 212|Caenorhabditis elegans Hypothetical pr... 29 2.6
Z66499-4|CAA91301.1| 164|Caenorhabditis elegans Hypothetical pr... 29 2.6
U55854-7|AAK68158.1| 166|Caenorhabditis elegans Hypothetical pr... 29 2.6
U55854-6|AAK68161.1| 197|Caenorhabditis elegans Hypothetical pr... 29 2.6
AL110490-13|CAB54454.1| 377|Caenorhabditis elegans Hypothetical... 29 3.5
AL110490-12|CAB54447.1| 326|Caenorhabditis elegans Hypothetical... 29 3.5
Z69885-4|CAA93757.1| 208|Caenorhabditis elegans Hypothetical pr... 29 4.6
Z81573-1|CAB04625.3| 909|Caenorhabditis elegans Hypothetical pr... 28 6.1
Z69302-8|CAA93261.3| 420|Caenorhabditis elegans Hypothetical pr... 28 6.1
U58760-7|AAK31463.1| 188|Caenorhabditis elegans Hypothetical pr... 28 6.1
AC024792-1|AAK84610.1| 938|Caenorhabditis elegans Importin beta... 28 6.1
AF025464-2|AAN84804.1| 496|Caenorhabditis elegans Prion-like-(q... 28 8.0
AF025464-1|AAN84805.1| 529|Caenorhabditis elegans Prion-like-(q... 28 8.0
>AC024780-6|AAF60569.1| 259|Caenorhabditis elegans Ribosomal
protein, small subunitprotein 4 protein.
Length = 259
Score = 320 bits (786), Expect = 7e-88
Identities = 150/226 (66%), Positives = 179/226 (79%)
Frame = -2
Query: 742 GPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIE 563
GPHKLRE LPL +FLRNRLKYAL E KI+ QR+++VDGKVRT +P GFMDVV+IE
Sbjct: 33 GPHKLRESLPLSLFLRNRLKYALNYTEAKKILTQRVVRVDGKVRTCHKFPTGFMDVVAIE 92
Query: 562 KTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPL 383
+TNE FR++YD KGR+ +HRI EA +KLCKVK V T K VP L T DGRTIRYPDP
Sbjct: 93 RTNEYFRMLYDTKGRYVVHRIQAAEADFKLCKVKSVRTVNKGVPVLTTTDGRTIRYPDPH 152
Query: 382 IKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHIKDS 203
+KVND+I +I+T KI D +KFE GNL +TGGRN+GRVG I RER PG+ DI+HIKDS
Sbjct: 153 VKVNDTIVFNISTQKITDSVKFEPGNLAYVTGGRNVGRVGIIGHRERLPGASDIIHIKDS 212
Query: 202 TGHTFATRLNNVFIIGKGTKAYISLPRGKGIRLTIAEERDKRIAAK 65
GH+FATR++NVF+IGKG KA +SLP G GIRL+IAEERDKR+A K
Sbjct: 213 AGHSFATRISNVFVIGKGNKALVSLPTGAGIRLSIAEERDKRMAQK 258
>AL132948-1|CAC51077.1| 735|Caenorhabditis elegans Hypothetical
protein Y39B6A.1 protein.
Length = 735
Score = 39.1 bits (87), Expect = 0.003
Identities = 22/65 (33%), Positives = 26/65 (40%)
Frame = -1
Query: 263 HHRVPRETSRLLRHCAHQGLHGTHLRHEVEQRVHNRQGHEGVHLAAARQGHPPHHRRGAG 84
HHR E AH G HGTH H E H+ H G H + H P H G
Sbjct: 402 HHRHHGEHHGTHHSPAHHGEHGTHHGHHGEH--HHAPAHHGHHESHGHGHHSPAHHGHHG 459
Query: 83 QAHRS 69
+ H +
Sbjct: 460 EHHHA 464
Score = 38.7 bits (86), Expect = 0.004
Identities = 21/56 (37%), Positives = 21/56 (37%), Gaps = 1/56 (1%)
Frame = -1
Query: 263 HHRVPRETSRLLRHCAHQGLHGTHLRHEVEQRVHNRQGHEGV-HLAAARQGHPPHH 99
HH E H H G HGTH H GH G H A A GH HH
Sbjct: 525 HHGHHGEHHHAPAHHGHHGEHGTHHGHHGSHHSPAHHGHHGEHHHAPAHHGHHGHH 580
Score = 37.9 bits (84), Expect = 0.008
Identities = 24/74 (32%), Positives = 25/74 (33%), Gaps = 1/74 (1%)
Frame = -1
Query: 272 ACGHHRVPRETSRLLRHCAHQGLHGTHLRHEVEQRVHNRQGHEGV-HLAAARQGHPPHHR 96
A HH E H H G HGTH H GH G H A A GH H
Sbjct: 464 APAHHGHHGEHHHAPAHHGHHGEHGTHHGHHGSHHSPAHHGHHGEHHHAPAHHGH--HGE 521
Query: 95 RGAGQAHRSQGRRA 54
G H + A
Sbjct: 522 HGTHHGHHGEHHHA 535
Score = 35.1 bits (77), Expect = 0.053
Identities = 18/51 (35%), Positives = 19/51 (37%), Gaps = 1/51 (1%)
Frame = -1
Query: 224 HCAHQGLHGTHLRHEVEQR-VHNRQGHEGVHLAAARQGHPPHHRRGAGQAH 75
H AH HG H RH E H+ H G H H HH A H
Sbjct: 392 HAAHHDEHGVHHRHHGEHHGTHHSPAHHGEH-GTHHGHHGEHHHAPAHHGH 441
Score = 35.1 bits (77), Expect = 0.053
Identities = 28/115 (24%), Positives = 36/115 (31%), Gaps = 2/115 (1%)
Frame = -1
Query: 407 HHPLPRPTYQSQRFH-PVRHRNYEDYGLHQV*VWELVYDHGRP*LGACG-HHRVPRETSR 234
HH + + H P H ++ ++G H H G G HH P
Sbjct: 462 HHAPAHHGHHGEHHHAPAHHGHHGEHGTHH---GHHGSHHSPAHHGHHGEHHHAPAHHGH 518
Query: 233 LLRHCAHQGLHGTHLRHEVEQRVHNRQGHEGVHLAAARQGHPPHHRRGAGQAHRS 69
H H HG H H H G G H H P H G+ H +
Sbjct: 519 ---HGEHGTHHGHHGEHHHAPAHHGHHGEHGTHHGHHGSHHSPAHHGHHGEHHHA 570
Score = 35.1 bits (77), Expect = 0.053
Identities = 26/79 (32%), Positives = 28/79 (35%), Gaps = 6/79 (7%)
Frame = -1
Query: 293 HGRP*LGACGHHRVPRETSRLLRHCAHQGLHGTH--LRHEVEQRVHNRQGHE-GVHLAAA 123
HG G+ G H T L H H G HGTH H H+ HE G H A
Sbjct: 643 HGDHHHGSHGVHHGHHGTHHSLAHHGHHGGHGTHHGAHHSPAHHGHHGAHHEHGAHHGAH 702
Query: 122 RQGHPP---HHRRGAGQAH 75
H HH G H
Sbjct: 703 HGHHDDKENHHHHGHHSKH 721
Score = 33.9 bits (74), Expect = 0.12
Identities = 27/115 (23%), Positives = 36/115 (31%), Gaps = 1/115 (0%)
Frame = -1
Query: 407 HHPLPRPTYQSQRFH-PVRHRNYEDYGLHQV*VWELVYDHGRP*LGACGHHRVPRETSRL 231
HH + + H P H ++ ++G H E + H G G H
Sbjct: 497 HHSPAHHGHHGEHHHAPAHHGHHGEHGTHHGHHGE--HHHAPAHHGHHGEHGTHHGHHGS 554
Query: 230 LRHCAHQGLHGTHLRHEVEQRVHNRQGHEGVHLAAARQGHPPHHRRGAGQAHRSQ 66
AH G HG H H G GVH + H H A H +
Sbjct: 555 HHSPAHHGHHGEHHHAPAHHGHHGHHGSHGVH-HGHHESHGHGHHAPAHHGHHGE 608
Score = 33.5 bits (73), Expect = 0.16
Identities = 20/67 (29%), Positives = 20/67 (29%)
Frame = -1
Query: 263 HHRVPRETSRLLRHCAHQGLHGTHLRHEVEQRVHNRQGHEGVHLAAARQGHPPHHRRGAG 84
HH P H G HG H H GH G H H P H G
Sbjct: 631 HHHAPHHEHHEHHGDHHHGSHGVHHGHHGTHHSLAHHGHHGGHGTHHGAHHSPAH-HGHH 689
Query: 83 QAHRSQG 63
AH G
Sbjct: 690 GAHHEHG 696
Score = 32.3 bits (70), Expect = 0.37
Identities = 30/117 (25%), Positives = 37/117 (31%), Gaps = 6/117 (5%)
Frame = -1
Query: 407 HHPLPRPTYQSQRFH-PVRHRNYEDYGLHQV*VWELV-YDHGRP*LGACGHH--RVPRET 240
HH + + H P H ++ +G H V + HG GHH
Sbjct: 555 HHSPAHHGHHGEHHHAPAHHGHHGHHGSHGVHHGHHESHGHGHHAPAHHGHHGEHGVHHG 614
Query: 239 SRLLRHCAHQGLHGTHLRHEVEQRVHNRQG--HEGVHLAAARQGHPPHHRRGAGQAH 75
+ AH G HG H H H G H G H GH H A H
Sbjct: 615 HHGAGYGAHHGHHGAHHHHAPHHEHHEHHGDHHHGSH--GVHHGHHGTHHSLAHHGH 669
Score = 32.3 bits (70), Expect = 0.37
Identities = 22/71 (30%), Positives = 24/71 (33%), Gaps = 4/71 (5%)
Frame = -1
Query: 263 HHRVPRETSRLLRHCAHQGLHGT----HLRHEVEQRVHNRQGHEGVHLAAARQGHPPHHR 96
HH E H H G HG+ H HE H+ H G H H HH
Sbjct: 560 HHGHHGEHHHAPAHHGHHGHHGSHGVHHGHHESHGHGHHAPAHHGHH--GEHGVHHGHHG 617
Query: 95 RGAGQAHRSQG 63
G G H G
Sbjct: 618 AGYGAHHGHHG 628
Score = 30.3 bits (65), Expect = 1.5
Identities = 18/59 (30%), Positives = 20/59 (33%), Gaps = 4/59 (6%)
Frame = -1
Query: 218 AHQGLHGTHLRHEVEQRVHN----RQGHEGVHLAAARQGHPPHHRRGAGQAHRSQGRRA 54
AH G HG H H H+ GH G H GH H A H + A
Sbjct: 514 AHHGHHGEHGTHHGHHGEHHHAPAHHGHHGEH--GTHHGHHGSHHSPAHHGHHGEHHHA 570
Score = 29.5 bits (63), Expect = 2.6
Identities = 19/67 (28%), Positives = 21/67 (31%), Gaps = 1/67 (1%)
Frame = -1
Query: 263 HHRVPRETSRLLRHCAHQGLHGTHLRHEVEQRVHNRQGHEGVHLAAARQG-HPPHHRRGA 87
HH P H HG H H GH G H + A G H HH A
Sbjct: 461 HHHAPAHHGHHGEHHHAPAHHGHHGEH------GTHHGHHGSHHSPAHHGHHGEHHHAPA 514
Query: 86 GQAHRSQ 66
H +
Sbjct: 515 HHGHHGE 521
>AF125964-1|AAD14753.1| 471|Caenorhabditis elegans Hypothetical
protein W03G1.5 protein.
Length = 471
Score = 33.5 bits (73), Expect = 0.16
Identities = 19/56 (33%), Positives = 21/56 (37%), Gaps = 2/56 (3%)
Frame = -1
Query: 224 HCAHQGLHGTHLRHEVEQRVHNRQGHEGVHLAAARQGH--PPHHRRGAGQAHRSQG 63
HC G HG H R H G G R GH PPHH G++ G
Sbjct: 361 HCP--GRHGRHGSRSHSPRGHGHGGRHGPPHCPGRHGHHGPPHHHHHDGRSPSRHG 414
Score = 29.5 bits (63), Expect(2) = 0.39
Identities = 16/43 (37%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
Frame = -1
Query: 224 HC-AHQGLHGTHLRHEVEQRVHNRQGHEGVHLAAARQGHPPHH 99
HC G HG H + R +R GH H R PPHH
Sbjct: 389 HCPGRHGHHGPPHHHHHDGRSPSRHGHHHHHHHGCRP-FPPHH 430
Score = 28.3 bits (60), Expect = 6.1
Identities = 17/51 (33%), Positives = 18/51 (35%), Gaps = 1/51 (1%)
Frame = -1
Query: 209 GLHGTHLRH-EVEQRVHNRQGHEGVHLAAARQGHPPHHRRGAGQAHRSQGR 60
G HG H RH R GH G +R G P G H GR
Sbjct: 283 GRHGGHGRHGSCSGSPRGRHGHGGHGGHGSRSGSPGGRHGHGGSGHHRGGR 333
Score = 21.4 bits (43), Expect(2) = 0.39
Identities = 8/19 (42%), Positives = 9/19 (47%)
Frame = -1
Query: 110 PPHHRRGAGQAHRSQGRRA 54
PPH R G H G R+
Sbjct: 450 PPHRRGGHCHHHHHNGHRS 468
>U97189-1|AAC48164.1| 623|Caenorhabditis elegans Hypothetical
protein C48B6.4 protein.
Length = 623
Score = 29.9 bits (64), Expect = 2.0
Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 6/50 (12%)
Frame = -2
Query: 523 GRFTIHRITPEEAKYKLCKVKRVATGPKNVP-----YLVTHDGRTIR-YP 392
G+ + R+T E Y+ CK+++ A K VP Y+V H R I+ YP
Sbjct: 302 GQIIVRRLTDPEYPYRHCKIQKFAVRCKLVPENYGWYVVWHCQRDIQEYP 351
>Z81579-4|CAE17915.1| 212|Caenorhabditis elegans Hypothetical
protein R13H4.8 protein.
Length = 212
Score = 29.5 bits (63), Expect = 2.6
Identities = 16/40 (40%), Positives = 17/40 (42%)
Frame = +1
Query: 76 CACPAPRRW*GGCPCRAAARCTPSCPCRL*TRCSTSWRRC 195
C C PR C CR C +C C TRC T R C
Sbjct: 86 CCCCRPRCC---CCCRRCCTCCRTCCC---TRCCTCCRPC 119
>Z66499-4|CAA91301.1| 164|Caenorhabditis elegans Hypothetical
protein T01B7.8 protein.
Length = 164
Score = 29.5 bits (63), Expect = 2.6
Identities = 16/40 (40%), Positives = 17/40 (42%)
Frame = +1
Query: 76 CACPAPRRW*GGCPCRAAARCTPSCPCRL*TRCSTSWRRC 195
C C PR C CR C +C C TRC T R C
Sbjct: 84 CCCCRPRCC---CCCRRCCTCCRTCCC---TRCCTCCRPC 117
>U55854-7|AAK68158.1| 166|Caenorhabditis elegans Hypothetical
protein C04G6.10 protein.
Length = 166
Score = 29.5 bits (63), Expect = 2.6
Identities = 16/40 (40%), Positives = 17/40 (42%)
Frame = +1
Query: 76 CACPAPRRW*GGCPCRAAARCTPSCPCRL*TRCSTSWRRC 195
C C PR C CR C +C C TRC T R C
Sbjct: 85 CCCCRPRCC---CCCRRCCTCCRTCCC---TRCCTCCRPC 118
>U55854-6|AAK68161.1| 197|Caenorhabditis elegans Hypothetical
protein C04G6.7 protein.
Length = 197
Score = 29.5 bits (63), Expect = 2.6
Identities = 16/40 (40%), Positives = 17/40 (42%)
Frame = +1
Query: 76 CACPAPRRW*GGCPCRAAARCTPSCPCRL*TRCSTSWRRC 195
C C PR C CR C +C C TRC T R C
Sbjct: 86 CCCCRPRCC---CCCRRCCTCCRTCCC---TRCCTCCRPC 119
>AL110490-13|CAB54454.1| 377|Caenorhabditis elegans Hypothetical
protein Y48B6A.13b protein.
Length = 377
Score = 29.1 bits (62), Expect = 3.5
Identities = 14/28 (50%), Positives = 19/28 (67%)
Frame = -1
Query: 305 LVYDHGRP*LGACGHHRVPRETSRLLRH 222
LV+D GR +G+ R RETS+LL+H
Sbjct: 207 LVFDDGRKKVGSSEGMRRSRETSQLLKH 234
>AL110490-12|CAB54447.1| 326|Caenorhabditis elegans Hypothetical
protein Y48B6A.13a protein.
Length = 326
Score = 29.1 bits (62), Expect = 3.5
Identities = 14/28 (50%), Positives = 19/28 (67%)
Frame = -1
Query: 305 LVYDHGRP*LGACGHHRVPRETSRLLRH 222
LV+D GR +G+ R RETS+LL+H
Sbjct: 156 LVFDDGRKKVGSSEGMRRSRETSQLLKH 183
>Z69885-4|CAA93757.1| 208|Caenorhabditis elegans Hypothetical
protein T04C10.4 protein.
Length = 208
Score = 28.7 bits (61), Expect = 4.6
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = -1
Query: 407 HHPLPRPTYQSQRFHPVRHRNYEDYGLH 324
HH PTY F+P H++Y+ + L+
Sbjct: 32 HHHHQSPTYPQSYFNPYSHQSYQQHHLN 59
>Z81573-1|CAB04625.3| 909|Caenorhabditis elegans Hypothetical
protein M02G9.1 protein.
Length = 909
Score = 28.3 bits (60), Expect = 6.1
Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
Frame = +1
Query: 112 CPCRAAARCTPSCP-CRL*TRCS-TSWRRCVP 201
C C+ A C P CP + + CS T R C+P
Sbjct: 54 CSCQQAPICQPQCPRAEINSDCSATCVRACIP 85
>Z69302-8|CAA93261.3| 420|Caenorhabditis elegans Hypothetical
protein F40F8.5 protein.
Length = 420
Score = 28.3 bits (60), Expect = 6.1
Identities = 16/64 (25%), Positives = 25/64 (39%), Gaps = 1/64 (1%)
Frame = -1
Query: 239 SRLLRHCAHQGLHGTHLRHEVEQRVHNRQGHEGVHLAAARQG-HPPHHRRGAGQAHRSQG 63
+R RH H+G HG ++H H H R G H P+ H +
Sbjct: 84 ARRRRHHNHEGHHGNDMKHRENMDRKKHGTHVDHHGRVRRNGDHDPNDPNVDHTGHNHRV 143
Query: 62 RRAV 51
+R++
Sbjct: 144 KRSI 147
>U58760-7|AAK31463.1| 188|Caenorhabditis elegans Hypothetical
protein C27A2.5 protein.
Length = 188
Score = 28.3 bits (60), Expect = 6.1
Identities = 15/40 (37%), Positives = 17/40 (42%)
Frame = +1
Query: 76 CACPAPRRW*GGCPCRAAARCTPSCPCRL*TRCSTSWRRC 195
C C P+ C CR C +C C TRC T R C
Sbjct: 85 CCCCRPKCC---CCCRRCCTCCRTCCC---TRCCTCCRPC 118
>AC024792-1|AAK84610.1| 938|Caenorhabditis elegans Importin beta
family protein 5 protein.
Length = 938
Score = 28.3 bits (60), Expect = 6.1
Identities = 16/55 (29%), Positives = 23/55 (41%)
Frame = +3
Query: 366 ESLTLISGSG*RMVRPSCVTKYGTFLGPVATRLTLHNLYLASSGVIRWIVNLPLT 530
E ++ + G V P C Y PVA + H Y A + ++R N P T
Sbjct: 868 EQASMYNAEG-EFVNPFCRLSYAPKQPPVAANIANHKAYFAQAVLVRGPGNCPET 921
>AF025464-2|AAN84804.1| 496|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 42,
isoform a protein.
Length = 496
Score = 27.9 bits (59), Expect = 8.0
Identities = 13/46 (28%), Positives = 22/46 (47%)
Frame = +2
Query: 575 NIHKSSRISRVSPNFSINLYEALFHNFQDFVSGQSILQTIPQENHQ 712
N H++S+ PN+ N Y+ FQ Q + + PQ+ +Q
Sbjct: 210 NYHQNSQNPYQQPNYQQNQYQPQLQQFQQNPRQQQHVYSNPQQGYQ 255
>AF025464-1|AAN84805.1| 529|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 42,
isoform b protein.
Length = 529
Score = 27.9 bits (59), Expect = 8.0
Identities = 13/46 (28%), Positives = 22/46 (47%)
Frame = +2
Query: 575 NIHKSSRISRVSPNFSINLYEALFHNFQDFVSGQSILQTIPQENHQ 712
N H++S+ PN+ N Y+ FQ Q + + PQ+ +Q
Sbjct: 232 NYHQNSQNPYQQPNYQQNQYQPQLQQFQQNPRQQQHVYSNPQQGYQ 277
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,479,014
Number of Sequences: 27780
Number of extensions: 398841
Number of successful extensions: 1341
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1306
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1756472266
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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