Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1242
         (785 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC737.05 |||peroxin Pex28/29|Schizosaccharomyces pombe|chr 3||...    28   1.3  
SPBC3H7.06c |pof9||F-box protein Paf9|Schizosaccharomyces pombe|...    26   7.0  

>SPCC737.05 |||peroxin Pex28/29|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 264

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 15/37 (40%), Positives = 18/37 (48%)
 Frame = +3

Query: 177 MLHYGKKTLKDLQHTLALSKS*YKLHNSINQNIYHHL 287
           M H     LKDLQ+ +A   S Y       QN YHH+
Sbjct: 76  MTHDVTTNLKDLQNFMASYSSSYDQLLYFRQNYYHHI 112


>SPBC3H7.06c |pof9||F-box protein Paf9|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 467

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 8/23 (34%), Positives = 16/23 (69%)
 Frame = +1

Query: 667 QYCITLTETFH*FRLDLTRRLCI 735
           ++C+ L ET H +++ L  R+C+
Sbjct: 163 EFCLALGETGHLYQVSLKTRICL 185


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,787,909
Number of Sequences: 5004
Number of extensions: 53266
Number of successful extensions: 100
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 381366860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)