Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1242
         (785 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1704 - 35481041-35481461,35481682-35481810,35482291-354823...    28   7.3  

>04_04_1704 - 35481041-35481461,35481682-35481810,35482291-35482397,
            35482515-35482583,35482825-35482936,35483013-35483131,
            35483211-35483291,35483629-35483700,35484039-35484239,
            35484442-35484528,35485284-35485523,35485991-35486455,
            35487434-35487556,35487643-35487769,35487851-35487919,
            35488061-35488189,35488628-35488722,35488808-35488876,
            35489332-35489443,35489545-35489663,35489753-35489833,
            35490898-35490969,35491052-35491267,35491524-35491601,
            35491694-35491831,35492403-35492414,35492639-35492872,
            35493076-35493130,35493222-35493352,35493813-35494546,
            35494613-35494820
          Length = 1634

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = -3

Query: 339  ITTCYNVKLQKIYKQPILNDDIYFDLLNCVVYISFYLKQVYVAN 208
            + TC  ++ +KIYKQ I    ++     C     FY + +Y+ N
Sbjct: 1379 LVTCGTIE-EKIYKQQIFKGGLFRTATECKEQPQFYNQDLYLQN 1421


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,069,470
Number of Sequences: 37544
Number of extensions: 249838
Number of successful extensions: 325
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 322
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 325
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2115411120
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)