Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1242
         (785 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    22   5.6  
DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex det...    22   5.6  
DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex det...    22   5.6  
DQ325077-1|ABD14091.1|  181|Apis mellifera complementary sex det...    22   7.4  
DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex det...    22   7.4  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    22   7.4  

>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 9/30 (30%), Positives = 15/30 (50%)
 Frame = -3

Query: 597 AFVSLLCLHFYLVQFFNFL*GEECVFRTDM 508
           AF+    + F +V +F      EC F +D+
Sbjct: 285 AFIFATIIQFAVVHYFTKYGSGECYFSSDL 314


>DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -3

Query: 354 DHN*NITTCYNVKLQKIYKQPILN 283
           ++N N    YN   +K+YK  I+N
Sbjct: 100 NYNNNYNNNYNNNYKKLYKNYIIN 123


>DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -3

Query: 354 DHN*NITTCYNVKLQKIYKQPILN 283
           ++N N    YN   +K+YK  I+N
Sbjct: 100 NYNNNYNNNYNNNYKKLYKNYIIN 123


>DQ325077-1|ABD14091.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = +1

Query: 631 YHSETYKNYKRSQYCITLTE 690
           Y++  Y NYK+  Y I   E
Sbjct: 96  YNNNNYNNYKKLYYNINYIE 115


>DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex
           determiner protein.
          Length = 191

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = +1

Query: 631 YHSETYKNYKRSQYCITLTE 690
           Y++  Y NYK+  Y I   E
Sbjct: 106 YNNNNYNNYKKLYYNINYIE 125


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 11/45 (24%), Positives = 23/45 (51%)
 Frame = -1

Query: 188 IVQHDFDCSFICMMFIVLEVRLSPLLKFDSGQFIGHESYRTEYVS 54
           +V  +F    IC++ ++  V +   + F   Q+ G    R+EY++
Sbjct: 392 LVLLNFGWQMICLIVVIALVSIIMYIAFIILQYAGLLRNRSEYLN 436


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 187,568
Number of Sequences: 438
Number of extensions: 3766
Number of successful extensions: 14
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24760908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)