Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1241
         (545 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23C4.17 |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual          27   1.8  
SPBC12C2.13c |fnx1|SPBC21D10.04c|MFS multidrug efflux transporte...    26   3.2  
SPAC227.03c |||mitochondrial NAD+ transporter|Schizosaccharomyce...    25   5.5  
SPBC3D6.05 |ptp4||phosphatidate cytidylyltransferase Ptp4 |Schiz...    25   5.5  
SPCC594.04c |||steroid oxidoreductase superfamily protein|Schizo...    25   9.6  

>SPAC23C4.17 |||tRNA |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 674

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = -2

Query: 337 IKSIYFKCSLFKRNILLVV*RLVSPHG 257
           ++SIYF CSLFK  I     R+   HG
Sbjct: 522 VRSIYFACSLFKEIIEANTNRVKFVHG 548


>SPBC12C2.13c |fnx1|SPBC21D10.04c|MFS multidrug efflux
           transporter|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 531

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -2

Query: 148 RPLPLSVSLT*YFNCVRKFHLLFTAPLF 65
           +P PL+V L  +FN    F +++  PLF
Sbjct: 290 QPTPLNVCLGNFFNAFCSFVIVYELPLF 317


>SPAC227.03c |||mitochondrial NAD+ transporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 371

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
 Frame = -3

Query: 174 YVYRGI--FGGGLYPSLFHLHSILIAFVNFTYF 82
           Y Y G+  F  GL+PSLF    + I F  + YF
Sbjct: 241 YKYEGLAAFYRGLFPSLFGTLHVGIQFPLYEYF 273


>SPBC3D6.05 |ptp4||phosphatidate cytidylyltransferase Ptp4
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 218

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = -3

Query: 345 WIVLKVFILNVVYLNVTYYWWYDVL*VRTGR 253
           WIVLKVF   +  ++V    W D      GR
Sbjct: 97  WIVLKVFPEEIAVMSVLLLSWCDTTASTVGR 127


>SPCC594.04c |||steroid oxidoreductase superfamily
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 338

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = -3

Query: 264 RTGRYHRSAYFCREVVIVTIL*LNIYNFFYYVYRGIF 154
           R G Y+R A   R V +  I+   IY  F+Y Y  IF
Sbjct: 123 RKGGYNRGAEDYRWVRVRQIMPKWIYPLFHYFYIHIF 159


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,227,972
Number of Sequences: 5004
Number of extensions: 44461
Number of successful extensions: 86
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 86
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 225926624
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)