Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1241
         (545 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY095176-1|AAM12269.1|  942|Drosophila melanogaster GH12763p pro...    29   4.1  
AE014134-3279|AAF53921.2|  942|Drosophila melanogaster CG9323-PA...    29   4.1  
AY051494-1|AAK92918.1|  818|Drosophila melanogaster GH14774p pro...    28   9.5  
AF313621-1|AAL78208.1|  818|Drosophila melanogaster CTCF protein.      28   9.5  
AE014296-1240|AAF50573.2|  818|Drosophila melanogaster CG8591-PA...    28   9.5  

>AY095176-1|AAM12269.1|  942|Drosophila melanogaster GH12763p
           protein.
          Length = 942

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 18/53 (33%), Positives = 25/53 (47%)
 Frame = -3

Query: 165 RGIFGGGLYPSLFHLHSILIAFVNFTYFSLHRFSLRDRNRSRGNVHPSARRSG 7
           R I G GLYP++ HL       +     ++H  +  D  R   N HPS+  SG
Sbjct: 768 RAIIGAGLYPNMAHLRK--SRQIKNRVRAIHTMATDDGRRV--NFHPSSVNSG 816


>AE014134-3279|AAF53921.2|  942|Drosophila melanogaster CG9323-PA
           protein.
          Length = 942

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 18/53 (33%), Positives = 25/53 (47%)
 Frame = -3

Query: 165 RGIFGGGLYPSLFHLHSILIAFVNFTYFSLHRFSLRDRNRSRGNVHPSARRSG 7
           R I G GLYP++ HL       +     ++H  +  D  R   N HPS+  SG
Sbjct: 768 RAIIGAGLYPNMAHLRK--SRQIKNRVRAIHTMATDDGRRV--NFHPSSVNSG 816


>AY051494-1|AAK92918.1|  818|Drosophila melanogaster GH14774p
           protein.
          Length = 818

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 16/68 (23%), Positives = 29/68 (42%)
 Frame = +3

Query: 93  NLRTQLKYYVSETERGKGLLQRFLCIHNKKNCIYSITKS*LLLLHGRNRQSGGTYPCGLT 272
           N   +LK   S ++       ++ C H    C Y+ +K  L+  H R+     ++ C + 
Sbjct: 272 NKEVKLKTASSTSQNSNASGHKYSCPH----CPYTASKKFLITRHSRSHDVEPSFKCSIC 327

Query: 273 RRHTTSNM 296
            R   SN+
Sbjct: 328 ERSFRSNV 335


>AF313621-1|AAL78208.1|  818|Drosophila melanogaster CTCF protein.
          Length = 818

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 16/68 (23%), Positives = 29/68 (42%)
 Frame = +3

Query: 93  NLRTQLKYYVSETERGKGLLQRFLCIHNKKNCIYSITKS*LLLLHGRNRQSGGTYPCGLT 272
           N   +LK   S ++       ++ C H    C Y+ +K  L+  H R+     ++ C + 
Sbjct: 272 NKEVKLKTASSTSQNSNASGHKYSCPH----CPYTASKKFLITRHSRSHDVEPSFKCSIC 327

Query: 273 RRHTTSNM 296
            R   SN+
Sbjct: 328 ERSFRSNV 335


>AE014296-1240|AAF50573.2|  818|Drosophila melanogaster CG8591-PA
           protein.
          Length = 818

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 16/68 (23%), Positives = 29/68 (42%)
 Frame = +3

Query: 93  NLRTQLKYYVSETERGKGLLQRFLCIHNKKNCIYSITKS*LLLLHGRNRQSGGTYPCGLT 272
           N   +LK   S ++       ++ C H    C Y+ +K  L+  H R+     ++ C + 
Sbjct: 272 NKEVKLKTASSTSQNSNASGHKYSCPH----CPYTASKKFLITRHSRSHDVEPSFKCSIC 327

Query: 273 RRHTTSNM 296
            R   SN+
Sbjct: 328 ERSFRSNV 335


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,654,102
Number of Sequences: 53049
Number of extensions: 461617
Number of successful extensions: 944
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 924
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 944
length of database: 24,988,368
effective HSP length: 81
effective length of database: 20,691,399
effective search space used: 2069139900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)