Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-1241
(545 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U11280-3|AAM97952.1| 403|Caenorhabditis elegans Hypothetical pr... 30 1.2
U11280-2|AAK77637.1| 452|Caenorhabditis elegans Hypothetical pr... 30 1.2
U11280-1|AAA19436.1| 450|Caenorhabditis elegans Hypothetical pr... 30 1.2
AY661556-1|AAV70493.1| 714|Caenorhabditis elegans acetylcholine... 29 1.7
AF078786-4|AAC26944.4| 714|Caenorhabditis elegans Sodium:neurot... 29 1.7
AC006680-8|AAK72298.1| 355|Caenorhabditis elegans Serpentine re... 27 6.7
U97407-9|AAL02457.2| 1768|Caenorhabditis elegans Hypothetical pr... 27 8.8
AF047652-2|AAC04393.3| 256|Caenorhabditis elegans Collagen prot... 27 8.8
AF047652-1|AAO44912.1| 294|Caenorhabditis elegans Collagen prot... 27 8.8
AC024831-8|AAK72079.3| 362|Caenorhabditis elegans Serpentine re... 27 8.8
>U11280-3|AAM97952.1| 403|Caenorhabditis elegans Hypothetical
protein T17E9.2c protein.
Length = 403
Score = 29.9 bits (64), Expect = 1.2
Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
Frame = -2
Query: 232 LP*SSNSYDFVIEYIQFFLLCIQRNL-WRRPLPLSV-SLT*YFNCVRKFHLLFTAPLFTP 59
+P + YD + ++ LC+ +NL RR P+ + +T N F FTA + P
Sbjct: 135 VPQTVRVYDKTVNMVEINFLCVHKNLRSRRVAPVLIREITRRVNVTGIFQAAFTAGIVIP 194
Query: 58 R*ESVKR 38
+ SV R
Sbjct: 195 KPVSVCR 201
>U11280-2|AAK77637.1| 452|Caenorhabditis elegans Hypothetical
protein T17E9.2b protein.
Length = 452
Score = 29.9 bits (64), Expect = 1.2
Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
Frame = -2
Query: 232 LP*SSNSYDFVIEYIQFFLLCIQRNL-WRRPLPLSV-SLT*YFNCVRKFHLLFTAPLFTP 59
+P + YD + ++ LC+ +NL RR P+ + +T N F FTA + P
Sbjct: 184 VPQTVRVYDKTVNMVEINFLCVHKNLRSRRVAPVLIREITRRVNVTGIFQAAFTAGIVIP 243
Query: 58 R*ESVKR 38
+ SV R
Sbjct: 244 KPVSVCR 250
>U11280-1|AAA19436.1| 450|Caenorhabditis elegans Hypothetical
protein T17E9.2a protein.
Length = 450
Score = 29.9 bits (64), Expect = 1.2
Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
Frame = -2
Query: 232 LP*SSNSYDFVIEYIQFFLLCIQRNL-WRRPLPLSV-SLT*YFNCVRKFHLLFTAPLFTP 59
+P + YD + ++ LC+ +NL RR P+ + +T N F FTA + P
Sbjct: 182 VPQTVRVYDKTVNMVEINFLCVHKNLRSRRVAPVLIREITRRVNVTGIFQAAFTAGIVIP 241
Query: 58 R*ESVKR 38
+ SV R
Sbjct: 242 KPVSVCR 248
>AY661556-1|AAV70493.1| 714|Caenorhabditis elegans
acetylcholine/choline transporter protein.
Length = 714
Score = 29.5 bits (63), Expect = 1.7
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = -3
Query: 357 CNLFWIVLKVFILNVVYLNVTYYWWYD 277
C +FW +L FI +VYL + + W D
Sbjct: 542 CYIFWKILFKFICPMVYLAILCFLWLD 568
>AF078786-4|AAC26944.4| 714|Caenorhabditis elegans
Sodium:neurotransmitter symporterfamily protein 6
protein.
Length = 714
Score = 29.5 bits (63), Expect = 1.7
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = -3
Query: 357 CNLFWIVLKVFILNVVYLNVTYYWWYD 277
C +FW +L FI +VYL + + W D
Sbjct: 542 CYIFWKILFKFICPMVYLAILCFLWLD 568
>AC006680-8|AAK72298.1| 355|Caenorhabditis elegans Serpentine
receptor, class t protein6 protein.
Length = 355
Score = 27.5 bits (58), Expect = 6.7
Identities = 9/16 (56%), Positives = 13/16 (81%)
Frame = +3
Query: 447 LW*WSHGDLCIAWVTY 494
LW WS G +CIA++T+
Sbjct: 278 LWAWSSGCMCIAYLTF 293
>U97407-9|AAL02457.2| 1768|Caenorhabditis elegans Hypothetical protein
C34G6.1 protein.
Length = 1768
Score = 27.1 bits (57), Expect = 8.8
Identities = 11/30 (36%), Positives = 20/30 (66%)
Frame = -2
Query: 157 LWRRPLPLSVSLT*YFNCVRKFHLLFTAPL 68
L+++PLP S+++T + C+ + LLF L
Sbjct: 1253 LFKQPLPYSINITDAWECLSRDKLLFAVIL 1282
>AF047652-2|AAC04393.3| 256|Caenorhabditis elegans Collagen protein
107, isoform a protein.
Length = 256
Score = 27.1 bits (57), Expect = 8.8
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = +3
Query: 219 LLHGRNRQSGGTYPCG 266
L+ GRN++SGGT CG
Sbjct: 68 LIFGRNKRSGGTCGCG 83
>AF047652-1|AAO44912.1| 294|Caenorhabditis elegans Collagen protein
107, isoform b protein.
Length = 294
Score = 27.1 bits (57), Expect = 8.8
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = +3
Query: 219 LLHGRNRQSGGTYPCG 266
L+ GRN++SGGT CG
Sbjct: 68 LIFGRNKRSGGTCGCG 83
>AC024831-8|AAK72079.3| 362|Caenorhabditis elegans Serpentine
receptor, class t protein24 protein.
Length = 362
Score = 27.1 bits (57), Expect = 8.8
Identities = 7/14 (50%), Positives = 11/14 (78%)
Frame = +3
Query: 450 W*WSHGDLCIAWVT 491
W WSHG +C+ ++T
Sbjct: 293 WQWSHGSVCLIYIT 306
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,400,318
Number of Sequences: 27780
Number of extensions: 250593
Number of successful extensions: 445
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 439
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 445
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1102518352
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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