Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1241
         (545 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY526236-1|AAS20469.1|   85|Apis mellifera epoxide hydrolase pro...    24   1.2  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   2.0  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   2.0  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    23   2.0  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    23   2.7  
X91509-1|CAA62809.1|  103|Apis mellifera histone H4 protein.           21   6.2  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    21   8.2  

>AY526236-1|AAS20469.1|   85|Apis mellifera epoxide hydrolase
           protein.
          Length = 85

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 11/43 (25%), Positives = 21/43 (48%)
 Frame = -3

Query: 360 LCNLFWIVLKVFILNVVYLNVTYYWWYDVL*VRTGRYHRSAYF 232
           L NLFW+ +  +  +++  N  Y  ++ V  + +     S YF
Sbjct: 34  LSNLFWLFVGTYFPSLIGANEHYSKFFPVSEILSFLIEESGYF 76


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +3

Query: 204 KS*LLLLHGRNRQSGGTYPCGLTR 275
           +S LL L+G NR+  G Y C + R
Sbjct: 380 QSELLRLNGINREDRGMYQCIVRR 403


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +3

Query: 204 KS*LLLLHGRNRQSGGTYPCGLTR 275
           +S LL L+G NR+  G Y C + R
Sbjct: 380 QSELLRLNGINREDRGMYQCIVRR 403


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -2

Query: 538 KKITKYFDSYRESILYVTHAI 476
           KKIT +FD  R  I +  H+I
Sbjct: 241 KKITHFFDLVRPLIAFKFHSI 261


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 22.6 bits (46), Expect = 2.7
 Identities = 15/47 (31%), Positives = 20/47 (42%)
 Frame = -3

Query: 174 YVYRGIFGGGLYPSLFHLHSILIAFVNFTYFSLHRFSLRDRNRSRGN 34
           + YR  F   LY S F    +   +  F Y S H+  L  R+  R N
Sbjct: 223 FTYRYGFSFLLYVSGFITTEVAGTYAIFLYISWHQKELVRRDSRRKN 269


>X91509-1|CAA62809.1|  103|Apis mellifera histone H4 protein.
          Length = 103

 Score = 21.4 bits (43), Expect = 6.2
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -3

Query: 339 VLKVFILNVVYLNVTY 292
           VLKVF+ NV+   VTY
Sbjct: 58  VLKVFLENVIRDAVTY 73


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = -1

Query: 470 VSMRPSPQVKNCKVPNY*STTNSRLIT 390
           + +RP   V+   +P   STT S  +T
Sbjct: 905 ILIRPERNVRQSMMPTRYSTTKSSAVT 931


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 160,713
Number of Sequences: 438
Number of extensions: 3870
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15581757
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)