Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-1240
(780 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4A8.09c |cwf21||complexed with Cdc5 protein Cwf21 |Schizosac... 35 0.015
SPBC1198.11c |reb1|SPBC660.01c|RNA polymerase I transcription te... 33 0.046
SPAC20G4.07c |sts1|erg4|C-24|Schizosaccharomyces pombe|chr 1|||M... 33 0.061
SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy... 32 0.080
SPAC22A12.14c |||BSD domain protein, unknown biological role|Sch... 30 0.43
SPBC26H8.09c |snf59||SWI/SNF complex subunit Snf59|Schizosacchar... 28 1.3
SPAC1F12.09 |gpi17||pig-S|Schizosaccharomyces pombe|chr 1|||Manual 28 1.3
SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces p... 27 2.3
SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable element|Schizosa... 27 2.3
SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyc... 27 2.3
SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyce... 27 2.3
SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable element|Schiz... 27 2.3
SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomy... 27 2.3
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 27 2.3
SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyc... 27 2.3
SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyc... 27 2.3
SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable element|Schizo... 27 2.3
SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomy... 27 2.3
SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable element|Schizos... 27 2.3
SPAC3F10.12c |||transcription factor |Schizosaccharomyces pombe|... 27 3.0
SPCC736.07c |||cell polarity protein |Schizosaccharomyces pombe|... 26 5.3
SPCC126.09 |||vacuolar membrane zinc transporter |Schizosaccharo... 26 5.3
SPBC23G7.06c |||conserved eukaryotic protein|Schizosaccharomyces... 26 5.3
SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein Bms1|Schizosacc... 25 9.2
SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyce... 25 9.2
>SPAC4A8.09c |cwf21||complexed with Cdc5 protein Cwf21
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 293
Score = 34.7 bits (76), Expect = 0.015
Identities = 17/62 (27%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Frame = +3
Query: 213 TKLVVYKKLNFLDDILVDSTEDMEAEESN-QINEQKPKTEQEVITDNQEYYEIRLVDNAD 389
+KL++Y++ L+++ + D A +SN + PK + +I D Q + + +D AD
Sbjct: 65 SKLLLYRE-QLLEEVSSQHSTDAAASDSNTNFGTENPKPPKAIIKDEQSQSKTKSLDEAD 123
Query: 390 IE 395
+E
Sbjct: 124 VE 125
>SPBC1198.11c |reb1|SPBC660.01c|RNA polymerase I transcription
termination factor Reb1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 504
Score = 33.1 bits (72), Expect = 0.046
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +3
Query: 69 RKNILARETTWQEIAKQISRPVEECRKRWR 158
RKN++ W +I ++++R +CR RWR
Sbjct: 325 RKNVVEHGKCWTKIGRKMARMPNDCRDRWR 354
>SPAC20G4.07c |sts1|erg4|C-24|Schizosaccharomyces pombe|chr
1|||Manual
Length = 453
Score = 32.7 bits (71), Expect = 0.061
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = -1
Query: 522 FSLVACLLASVPFSYDHCSFFLFS 451
F L+ +A VPF+Y HC+ +LFS
Sbjct: 276 FMLIFWNMAGVPFTYSHCTLYLFS 299
>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1115
Score = 32.3 bits (70), Expect = 0.080
Identities = 24/118 (20%), Positives = 52/118 (44%)
Frame = +3
Query: 9 EKLIDLVKPYAHLYNVKDPSRKNILARETTWQEIAKQISRPVEECRKRWRGLRDSYTRSK 188
E+ I+L + Y L ++++ ++ E W+E Q+ VEE + + ++ ++S
Sbjct: 500 EQSIELTRLYKQLQDIEEDYENKLMRMEQQWREDVDQLQEYVEEITQELQDTKEVLSKSS 559
Query: 189 RLGSMPGYTKLVVYKKLNFLDDILVDSTEDMEAEESNQINEQKPKTEQEVITDNQEYY 362
+ Y ++V + +I E EES + +++ + + IT E Y
Sbjct: 560 K--ESDDYEEVVGKLRTEAEREIEKFEKTIRENEESISLFKEEVEKLTDEITQLSERY 615
>SPAC22A12.14c |||BSD domain protein, unknown biological
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 347
Score = 29.9 bits (64), Expect = 0.43
Identities = 18/56 (32%), Positives = 29/56 (51%)
Frame = +3
Query: 264 DSTEDMEAEESNQINEQKPKTEQEVITDNQEYYEIRLVDNADIESKFIKILPKQIE 431
D D E ++ Q+N++K ++ +E T+N E+ D+ES K L QIE
Sbjct: 238 DERSDEEESDNEQVNDEKKQSSEEDTTENNSAAEVIDETVNDLESAVSKGL--QIE 291
>SPBC26H8.09c |snf59||SWI/SNF complex subunit
Snf59|Schizosaccharomyces pombe|chr 2|||Manual
Length = 515
Score = 28.3 bits (60), Expect = 1.3
Identities = 13/58 (22%), Positives = 31/58 (53%)
Frame = +3
Query: 273 EDMEAEESNQINEQKPKTEQEVITDNQEYYEIRLVDNADIESKFIKILPKQIENSNKQ 446
ED+ E S+ +N+++ V + E+++ ++ +++ + PK +NSNK+
Sbjct: 4 EDITLEHSDDLNKEESGESNRVNIEEPEHHDNSNKESTNLDDLNMLEEPKYHDNSNKE 61
Score = 25.8 bits (54), Expect = 7.0
Identities = 11/42 (26%), Positives = 21/42 (50%)
Frame = +3
Query: 315 KPKTEQEVITDNQEYYEIRLVDNADIESKFIKILPKQIENSN 440
K E+ + + EYY + ++ N S +K+ K ++N N
Sbjct: 424 KALIEKNISWADDEYYHMDVMANGSTRSSSVKLELKSMDNQN 465
>SPAC1F12.09 |gpi17||pig-S|Schizosaccharomyces pombe|chr 1|||Manual
Length = 554
Score = 28.3 bits (60), Expect = 1.3
Identities = 14/49 (28%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Frame = +3
Query: 582 NQIPVASRTQTI-DKLIERILKENTNEIDVFFRSMASSVKKLQPNLIPK 725
N +PV+S + T+ D+L+ + + E+ E +++A V +Q +PK
Sbjct: 405 NDVPVSSLSATLADRLLRQRIAESCIEASDTLQNLAKLVHSMQSMAVPK 453
>SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 27.5 bits (58), Expect = 2.3
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +3
Query: 75 NILARETTWQEIAKQISRPVEEC 143
NI+ R TW+ I KQI V+ C
Sbjct: 935 NIILRRFTWKGIRKQIQEYVQNC 957
>SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 27.5 bits (58), Expect = 2.3
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +3
Query: 75 NILARETTWQEIAKQISRPVEEC 143
NI+ R TW+ I KQI V+ C
Sbjct: 935 NIILRRFTWKGIRKQIQEYVQNC 957
>SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 27.5 bits (58), Expect = 2.3
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +3
Query: 75 NILARETTWQEIAKQISRPVEEC 143
NI+ R TW+ I KQI V+ C
Sbjct: 935 NIILRRFTWKGIRKQIQEYVQNC 957
>SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 27.5 bits (58), Expect = 2.3
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +3
Query: 75 NILARETTWQEIAKQISRPVEEC 143
NI+ R TW+ I KQI V+ C
Sbjct: 935 NIILRRFTWKGIRKQIQEYVQNC 957
>SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 27.5 bits (58), Expect = 2.3
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +3
Query: 75 NILARETTWQEIAKQISRPVEEC 143
NI+ R TW+ I KQI V+ C
Sbjct: 935 NIILRRFTWKGIRKQIQEYVQNC 957
>SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 27.5 bits (58), Expect = 2.3
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +3
Query: 75 NILARETTWQEIAKQISRPVEEC 143
NI+ R TW+ I KQI V+ C
Sbjct: 935 NIILRRFTWKGIRKQIQEYVQNC 957
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 27.5 bits (58), Expect = 2.3
Identities = 15/62 (24%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
Frame = +3
Query: 261 VDSTEDME--AEESNQINEQKPKTEQEVITDNQEYYEIRLVDNADIESKFIKILPKQIEN 434
+DS E+++ +++ NQ+N + K E + T+ + ++ +N D +S+ K E+
Sbjct: 16 LDSDEEVQRISDKVNQLNTSENKNEDQKATNLSDRLGPKITENVDAKSEQDKATNTIAED 75
Query: 435 SN 440
+N
Sbjct: 76 AN 77
>SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 27.5 bits (58), Expect = 2.3
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +3
Query: 75 NILARETTWQEIAKQISRPVEEC 143
NI+ R TW+ I KQI V+ C
Sbjct: 935 NIILRRFTWKGIRKQIQEYVQNC 957
>SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1333
Score = 27.5 bits (58), Expect = 2.3
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +3
Query: 75 NILARETTWQEIAKQISRPVEEC 143
NI+ R TW+ I KQI V+ C
Sbjct: 935 NIILRRFTWKGIRKQIQEYVQNC 957
>SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 27.5 bits (58), Expect = 2.3
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +3
Query: 75 NILARETTWQEIAKQISRPVEEC 143
NI+ R TW+ I KQI V+ C
Sbjct: 935 NIILRRFTWKGIRKQIQEYVQNC 957
>SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 27.5 bits (58), Expect = 2.3
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +3
Query: 75 NILARETTWQEIAKQISRPVEEC 143
NI+ R TW+ I KQI V+ C
Sbjct: 935 NIILRRFTWKGIRKQIQEYVQNC 957
>SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 27.5 bits (58), Expect = 2.3
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +3
Query: 75 NILARETTWQEIAKQISRPVEEC 143
NI+ R TW+ I KQI V+ C
Sbjct: 935 NIILRRFTWKGIRKQIQEYVQNC 957
>SPAC3F10.12c |||transcription factor |Schizosaccharomyces pombe|chr
1|||Manual
Length = 201
Score = 27.1 bits (57), Expect = 3.0
Identities = 11/36 (30%), Positives = 20/36 (55%)
Frame = +3
Query: 57 KDPSRKNILARETTWQEIAKQISRPVEECRKRWRGL 164
++ S L + T QE+A++ +R EC + WR +
Sbjct: 144 REKSNLEKLVADHTIQELARENARLKSECERAWRSV 179
>SPCC736.07c |||cell polarity protein |Schizosaccharomyces pombe|chr
3|||Manual
Length = 699
Score = 26.2 bits (55), Expect = 5.3
Identities = 18/70 (25%), Positives = 35/70 (50%), Gaps = 4/70 (5%)
Frame = +3
Query: 252 DILVDSTEDMEAEESNQINEQKPKTEQEVITDNQEYYEIR--LVDNAD--IESKFIKILP 419
D +V+ T + ES + + K + + +Q YYE+R ++DN I+ + + +
Sbjct: 611 DFVVERTPSDKISESKEAFDAKVEEISDQRAISQRYYELRKKMIDNTGEYIKDEEEQAVI 670
Query: 420 KQIENSNKQP 449
EN N++P
Sbjct: 671 PLDENGNEKP 680
>SPCC126.09 |||vacuolar membrane zinc transporter
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 418
Score = 26.2 bits (55), Expect = 5.3
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = -3
Query: 643 LRILSMSLSMVCVLDATGI 587
LRILS+S++ CV A+GI
Sbjct: 35 LRILSLSINAFCVFGASGI 53
>SPBC23G7.06c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 745
Score = 26.2 bits (55), Expect = 5.3
Identities = 13/35 (37%), Positives = 22/35 (62%)
Frame = +3
Query: 249 DDILVDSTEDMEAEESNQINEQKPKTEQEVITDNQ 353
+D+LVD ++EAE+SN + KT + ++ NQ
Sbjct: 655 NDVLVDLNPNVEAEKSNP-HSNSQKTSKNDMSRNQ 688
>SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein
Bms1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1121
Score = 25.4 bits (53), Expect = 9.2
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = +3
Query: 273 EDMEAEESNQINEQKPKTEQEVITDNQE 356
ED+E EE++ NE + + V +N+E
Sbjct: 620 EDLEDEENSSDNEMEESSGSSVTAENEE 647
>SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1067
Score = 25.4 bits (53), Expect = 9.2
Identities = 17/70 (24%), Positives = 32/70 (45%), Gaps = 3/70 (4%)
Frame = +3
Query: 204 PGYTKLVVYKKLNFLDDILVDSTEDMEA---EESNQINEQKPKTEQEVITDNQEYYEIRL 374
P T VV+K D+ +D+ D + E+ + NE P T+++ DN ++ +
Sbjct: 46 PFRTSNVVFKSKEPKDNKPLDNKNDPKKTHNEDESHTNESLPSTDKKKKKDNDDFKQNLK 105
Query: 375 VDNADIESKF 404
+ E K+
Sbjct: 106 SSSNKTEEKY 115
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,104,618
Number of Sequences: 5004
Number of extensions: 64778
Number of successful extensions: 252
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 241
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 252
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 377352472
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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