Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1240
         (780 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ439353-3|CAD27925.1| 1200|Anopheles gambiae putative TPR-conta...    25   2.6  
AF281078-1|AAF82131.1| 2051|Anopheles gambiae vitellogenin 1 pro...    24   6.1  
AF387862-2|AAL56548.1|  942|Anopheles gambiae pol polyprotein pr...    23   8.0  

>AJ439353-3|CAD27925.1| 1200|Anopheles gambiae putative
           TPR-containing phosphoprotein protein.
          Length = 1200

 Score = 25.0 bits (52), Expect = 2.6
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +3

Query: 618 DKLIERILKENTNEIDVFFR 677
           DKL + ILKE+ N ID + R
Sbjct: 516 DKLYKDILKEHPNYIDCYLR 535


>AF281078-1|AAF82131.1| 2051|Anopheles gambiae vitellogenin 1 protein.
          Length = 2051

 Score = 23.8 bits (49), Expect = 6.1
 Identities = 12/47 (25%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
 Frame = +3

Query: 228  YKKLNFLDDILVDSTEDM-EAEESNQINEQKPKTEQEVITDNQEYYE 365
            YK  +  D    +S+    E+++SN  + ++ K  +E   + Q+Y E
Sbjct: 1915 YKDFDLSDSSSSESSSSSDESDDSNSSSSEERKPNREHFFEKQQYTE 1961


>AF387862-2|AAL56548.1|  942|Anopheles gambiae pol polyprotein
           protein.
          Length = 942

 Score = 23.4 bits (48), Expect = 8.0
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = +3

Query: 237 LNFLDDILVDSTEDMEAEESNQINEQKPKTEQEVITDNQEYYEIRL 374
           L ++DD+LV  +ED E E+    N  K   +   + D + Y  IR+
Sbjct: 622 LLYVDDMLVACSEDREYEDIE--NTLKRHFKITTLGDVRNYLGIRI 665


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 770,780
Number of Sequences: 2352
Number of extensions: 17259
Number of successful extensions: 55
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 55
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 81497388
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)