Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-1240
(780 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BX005439-1|CAI18748.1| 340|Homo sapiens MHC class I polypeptide... 32 2.0
BX001040-2|CAI18630.1| 340|Homo sapiens MHC class I polypeptide... 32 2.0
BC044218-1|AAH44218.1| 340|Homo sapiens MICB protein protein. 32 2.0
AL663061-1|CAM25435.1| 340|Homo sapiens MHC class I polypeptide... 32 2.0
AL662866-1|CAM24902.1| 340|Homo sapiens MHC class I polypeptide... 32 2.0
AL161622-2|CAI20456.1| 510|Homo sapiens protein ( vel protein s... 32 2.0
BC014009-1|AAH14009.2| 476|Homo sapiens GLTSCR2 protein protein. 31 3.5
BC010095-1|AAH10095.1| 478|Homo sapiens glioma tumor suppressor... 31 3.5
BC007248-1|AAH07248.1| 474|Homo sapiens glioma tumor suppressor... 31 3.5
BC006311-1|AAH06311.1| 478|Homo sapiens glioma tumor suppressor... 31 3.5
BC004229-1|AAH04229.2| 472|Homo sapiens GLTSCR2 protein protein. 31 3.5
AY535000-1|AAS46028.1| 478|Homo sapiens preS1 binding protein p... 31 3.5
AL359336-1|CAB94787.1| 467|Homo sapiens GLTSCR2, glioma tumor ... 31 3.5
AL359335-1|CAB94786.1| 459|Homo sapiens GLTSCR2, glioma tumor ... 31 3.5
AF182076-1|AAF62873.1| 478|Homo sapiens glioma tumor suppressor... 31 3.5
BX119958-3|CAI18745.2| 289|Homo sapiens MHC class I polypeptide... 31 4.7
BC115026-1|AAI15027.1| 1339|Homo sapiens claspin homolog (Xenopu... 31 4.7
BC115025-1|AAI15026.1| 1275|Homo sapiens CLSPN protein protein. 31 4.7
BC113116-1|AAI13117.1| 1339|Homo sapiens claspin protein. 31 4.7
AL669854-8|CAI17648.2| 289|Homo sapiens MHC class I polypeptide... 31 4.7
AL645933-1|CAI41760.2| 289|Homo sapiens MHC class I polypeptide... 31 4.7
AL354864-2|CAH73807.1| 1331|Homo sapiens claspin homolog (Xenopu... 31 4.7
AF297866-1|AAG24515.1| 1332|Homo sapiens Hu-Claspin protein. 31 6.1
BC112201-1|AAI12202.1| 1849|Homo sapiens BTAF1 RNA polymerase II... 30 8.1
BC047009-1|AAH47009.1| 328|Homo sapiens BTAF1 protein protein. 30 8.1
BC030273-1|AAH30273.1| 560|Homo sapiens BTAF1 protein protein. 30 8.1
AL365398-1|CAI14103.1| 1849|Homo sapiens BTAF1 RNA polymerase II... 30 8.1
AL359198-2|CAH73478.1| 1849|Homo sapiens BTAF1 RNA polymerase II... 30 8.1
AJ001017-1|CAA04475.1| 1849|Homo sapiens TBP associated factor p... 30 8.1
AF038362-1|AAC04573.1| 1849|Homo sapiens TBP-associated factor 1... 30 8.1
>BX005439-1|CAI18748.1| 340|Homo sapiens MHC class I
polypeptide-related sequence B protein.
Length = 340
Score = 32.3 bits (70), Expect = 2.0
Identities = 16/52 (30%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Frame = +3
Query: 555 KIVQYIEDQNQIPVASRTQTIDKLIERILKENTNEIDVFFRSM-ASSVKKLQ 707
+ + +I+DQ +P +SR QT+ + KE+ + +R+M A ++KLQ
Sbjct: 98 RTLTHIKDQKGVPQSSRAQTLAMNVTNFWKEDAMKTKTHYRAMQADCLQKLQ 149
>BX001040-2|CAI18630.1| 340|Homo sapiens MHC class I
polypeptide-related sequence B protein.
Length = 340
Score = 32.3 bits (70), Expect = 2.0
Identities = 16/52 (30%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Frame = +3
Query: 555 KIVQYIEDQNQIPVASRTQTIDKLIERILKENTNEIDVFFRSM-ASSVKKLQ 707
+ + +I+DQ +P +SR QT+ + KE+ + +R+M A ++KLQ
Sbjct: 98 RTLTHIKDQKGVPQSSRAQTLAMNVTNFWKEDAMKTKTHYRAMQADCLQKLQ 149
>BC044218-1|AAH44218.1| 340|Homo sapiens MICB protein protein.
Length = 340
Score = 32.3 bits (70), Expect = 2.0
Identities = 16/52 (30%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Frame = +3
Query: 555 KIVQYIEDQNQIPVASRTQTIDKLIERILKENTNEIDVFFRSM-ASSVKKLQ 707
+ + +I+DQ +P +SR QT+ + KE+ + +R+M A ++KLQ
Sbjct: 98 RTLTHIKDQKGVPQSSRAQTLAMNVTNFWKEDAMKTKTHYRAMQADCLQKLQ 149
>AL663061-1|CAM25435.1| 340|Homo sapiens MHC class I
polypeptide-related sequence B protein.
Length = 340
Score = 32.3 bits (70), Expect = 2.0
Identities = 16/52 (30%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Frame = +3
Query: 555 KIVQYIEDQNQIPVASRTQTIDKLIERILKENTNEIDVFFRSM-ASSVKKLQ 707
+ + +I+DQ +P +SR QT+ + KE+ + +R+M A ++KLQ
Sbjct: 98 RTLTHIKDQKGVPQSSRAQTLAMNVTNFWKEDAMKTKTHYRAMQADCLQKLQ 149
>AL662866-1|CAM24902.1| 340|Homo sapiens MHC class I
polypeptide-related sequence B protein.
Length = 340
Score = 32.3 bits (70), Expect = 2.0
Identities = 16/52 (30%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Frame = +3
Query: 555 KIVQYIEDQNQIPVASRTQTIDKLIERILKENTNEIDVFFRSM-ASSVKKLQ 707
+ + +I+DQ +P +SR QT+ + KE+ + +R+M A ++KLQ
Sbjct: 98 RTLTHIKDQKGVPQSSRAQTLAMNVTNFWKEDAMKTKTHYRAMQADCLQKLQ 149
>AL161622-2|CAI20456.1| 510|Homo sapiens protein ( vel protein
similar to seven ).).
Length = 510
Score = 32.3 bits (70), Expect = 2.0
Identities = 20/65 (30%), Positives = 35/65 (53%)
Frame = -1
Query: 636 FFL*VYRWSVFWMRLVFDSDLLCIVRSLVHLQVVVSVIFSLVACLLASVPFSYDHCSFFL 457
FFL ++ FW+ L S L ++ + V + I L CL+ ++ F+ DHC+ L
Sbjct: 340 FFLVIHPLGNFWLILSVTSIELGVLGLMTLWNVDMDCISIL--CLIYTLNFAIDHCAPLL 397
Query: 456 FSWVV 442
F++V+
Sbjct: 398 FTFVL 402
>BC014009-1|AAH14009.2| 476|Homo sapiens GLTSCR2 protein protein.
Length = 476
Score = 31.5 bits (68), Expect = 3.5
Identities = 16/42 (38%), Positives = 24/42 (57%)
Frame = +3
Query: 63 PSRKNILARETTWQEIAKQISRPVEECRKRWRGLRDSYTRSK 188
P+ K + +E W+++AKQ P E R + R L S TR+K
Sbjct: 138 PNAKKLRRKEQLWEKLAKQGELPREVRRAQARLLNPSATRAK 179
>BC010095-1|AAH10095.1| 478|Homo sapiens glioma tumor suppressor
candidate region gene 2 protein.
Length = 478
Score = 31.5 bits (68), Expect = 3.5
Identities = 16/42 (38%), Positives = 24/42 (57%)
Frame = +3
Query: 63 PSRKNILARETTWQEIAKQISRPVEECRKRWRGLRDSYTRSK 188
P+ K + +E W+++AKQ P E R + R L S TR+K
Sbjct: 140 PNAKKLRRKEQLWEKLAKQGELPREVRRAQARLLNPSATRAK 181
>BC007248-1|AAH07248.1| 474|Homo sapiens glioma tumor suppressor
candidate region gene 2 protein.
Length = 474
Score = 31.5 bits (68), Expect = 3.5
Identities = 16/42 (38%), Positives = 24/42 (57%)
Frame = +3
Query: 63 PSRKNILARETTWQEIAKQISRPVEECRKRWRGLRDSYTRSK 188
P+ K + +E W+++AKQ P E R + R L S TR+K
Sbjct: 136 PNAKKLRRKEQLWEKLAKQGELPREVRRAQARLLNPSATRAK 177
>BC006311-1|AAH06311.1| 478|Homo sapiens glioma tumor suppressor
candidate region gene 2 protein.
Length = 478
Score = 31.5 bits (68), Expect = 3.5
Identities = 16/42 (38%), Positives = 24/42 (57%)
Frame = +3
Query: 63 PSRKNILARETTWQEIAKQISRPVEECRKRWRGLRDSYTRSK 188
P+ K + +E W+++AKQ P E R + R L S TR+K
Sbjct: 140 PNAKKLRRKEQLWEKLAKQGELPREVRRAQARLLNPSATRAK 181
>BC004229-1|AAH04229.2| 472|Homo sapiens GLTSCR2 protein protein.
Length = 472
Score = 31.5 bits (68), Expect = 3.5
Identities = 16/42 (38%), Positives = 24/42 (57%)
Frame = +3
Query: 63 PSRKNILARETTWQEIAKQISRPVEECRKRWRGLRDSYTRSK 188
P+ K + +E W+++AKQ P E R + R L S TR+K
Sbjct: 134 PNAKKLRRKEQLWEKLAKQGELPREVRRAQARLLNPSATRAK 175
>AY535000-1|AAS46028.1| 478|Homo sapiens preS1 binding protein
protein.
Length = 478
Score = 31.5 bits (68), Expect = 3.5
Identities = 16/42 (38%), Positives = 24/42 (57%)
Frame = +3
Query: 63 PSRKNILARETTWQEIAKQISRPVEECRKRWRGLRDSYTRSK 188
P+ K + +E W+++AKQ P E R + R L S TR+K
Sbjct: 140 PNAKKLRRKEQLWEKLAKQGELPREVRRAQARLLNPSATRAK 181
>AL359336-1|CAB94787.1| 467|Homo sapiens GLTSCR2, glioma tumor
suppressor candidate region protein 2 (AF182076_1)
protein.
Length = 467
Score = 31.5 bits (68), Expect = 3.5
Identities = 16/42 (38%), Positives = 24/42 (57%)
Frame = +3
Query: 63 PSRKNILARETTWQEIAKQISRPVEECRKRWRGLRDSYTRSK 188
P+ K + +E W+++AKQ P E R + R L S TR+K
Sbjct: 129 PNAKKLRRKEQLWEKLAKQGELPREVRRAQARLLNPSATRAK 170
>AL359335-1|CAB94786.1| 459|Homo sapiens GLTSCR2, glioma tumor
suppressor candidate region protein 2 (AF182076_1)
protein.
Length = 459
Score = 31.5 bits (68), Expect = 3.5
Identities = 16/42 (38%), Positives = 24/42 (57%)
Frame = +3
Query: 63 PSRKNILARETTWQEIAKQISRPVEECRKRWRGLRDSYTRSK 188
P+ K + +E W+++AKQ P E R + R L S TR+K
Sbjct: 121 PNAKKLRRKEQLWEKLAKQGELPREVRRAQARLLNPSATRAK 162
>AF182076-1|AAF62873.1| 478|Homo sapiens glioma tumor suppressor
candidate region protein 2 protein.
Length = 478
Score = 31.5 bits (68), Expect = 3.5
Identities = 16/42 (38%), Positives = 24/42 (57%)
Frame = +3
Query: 63 PSRKNILARETTWQEIAKQISRPVEECRKRWRGLRDSYTRSK 188
P+ K + +E W+++AKQ P E R + R L S TR+K
Sbjct: 140 PNAKKLRRKEQLWEKLAKQGELPREVRRAQARLLNPSATRAK 181
>BX119958-3|CAI18745.2| 289|Homo sapiens MHC class I
polypeptide-related sequence A protein.
Length = 289
Score = 31.1 bits (67), Expect = 4.7
Identities = 12/39 (30%), Positives = 23/39 (58%)
Frame = +3
Query: 567 YIEDQNQIPVASRTQTIDKLIERILKENTNEIDVFFRSM 683
+I+DQ ++P +SR QT+ + LKE+ + + +M
Sbjct: 102 HIKDQKEVPQSSRAQTLAMNVRNFLKEDAMKTKTHYHAM 140
>BC115026-1|AAI15027.1| 1339|Homo sapiens claspin homolog (Xenopus
laevis) protein.
Length = 1339
Score = 31.1 bits (67), Expect = 4.7
Identities = 20/67 (29%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Frame = +3
Query: 249 DDILVDSTEDMEAEESNQ-INEQKPKTEQEVITDNQEYYEIRLVDNADIESKFIKILPKQ 425
D+ D E +E EE + + E++ K E+E NQE E L+ + +IE+K K + K+
Sbjct: 640 DESEEDGEEKVEKEEKEEELEEEEEKEEEEEEEGNQETAEF-LLSSEEIETKDEKEMDKE 698
Query: 426 IENSNKQ 446
+ + +
Sbjct: 699 NNDGSSE 705
>BC115025-1|AAI15026.1| 1275|Homo sapiens CLSPN protein protein.
Length = 1275
Score = 31.1 bits (67), Expect = 4.7
Identities = 20/67 (29%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Frame = +3
Query: 249 DDILVDSTEDMEAEESNQ-INEQKPKTEQEVITDNQEYYEIRLVDNADIESKFIKILPKQ 425
D+ D E +E EE + + E++ K E+E NQE E L+ + +IE+K K + K+
Sbjct: 576 DESEEDGEEKVEKEEKEEELEEEEEKEEEEEEEGNQETAEF-LLSSEEIETKDEKEMDKE 634
Query: 426 IENSNKQ 446
+ + +
Sbjct: 635 NNDGSSE 641
>BC113116-1|AAI13117.1| 1339|Homo sapiens claspin protein.
Length = 1339
Score = 31.1 bits (67), Expect = 4.7
Identities = 20/67 (29%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Frame = +3
Query: 249 DDILVDSTEDMEAEESNQ-INEQKPKTEQEVITDNQEYYEIRLVDNADIESKFIKILPKQ 425
D+ D E +E EE + + E++ K E+E NQE E L+ + +IE+K K + K+
Sbjct: 640 DESEEDGEEKVEKEEKEEELEEEEEKEEEEEEEGNQETAEF-LLSSEEIETKDEKEMDKE 698
Query: 426 IENSNKQ 446
+ + +
Sbjct: 699 NNDGSSE 705
>AL669854-8|CAI17648.2| 289|Homo sapiens MHC class I
polypeptide-related sequence A protein.
Length = 289
Score = 31.1 bits (67), Expect = 4.7
Identities = 12/39 (30%), Positives = 23/39 (58%)
Frame = +3
Query: 567 YIEDQNQIPVASRTQTIDKLIERILKENTNEIDVFFRSM 683
+I+DQ ++P +SR QT+ + LKE+ + + +M
Sbjct: 102 HIKDQKEVPQSSRAQTLAMNVRNFLKEDAMKTKTHYHAM 140
>AL645933-1|CAI41760.2| 289|Homo sapiens MHC class I
polypeptide-related sequence A protein.
Length = 289
Score = 31.1 bits (67), Expect = 4.7
Identities = 12/39 (30%), Positives = 23/39 (58%)
Frame = +3
Query: 567 YIEDQNQIPVASRTQTIDKLIERILKENTNEIDVFFRSM 683
+I+DQ ++P +SR QT+ + LKE+ + + +M
Sbjct: 102 HIKDQKEVPQSSRAQTLAMNVRNFLKEDAMKTKTHYHAM 140
>AL354864-2|CAH73807.1| 1331|Homo sapiens claspin homolog (Xenopus
laevis) protein.
Length = 1331
Score = 31.1 bits (67), Expect = 4.7
Identities = 20/67 (29%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Frame = +3
Query: 249 DDILVDSTEDMEAEESNQ-INEQKPKTEQEVITDNQEYYEIRLVDNADIESKFIKILPKQ 425
D+ D E +E EE + + E++ K E+E NQE E L+ + +IE+K K + K+
Sbjct: 639 DESEEDGEEKVEKEEKEEELEEEEEKEEEEEEEGNQETAEF-LLSSEEIETKDEKEMDKE 697
Query: 426 IENSNKQ 446
+ + +
Sbjct: 698 NNDGSSE 704
>AF297866-1|AAG24515.1| 1332|Homo sapiens Hu-Claspin protein.
Length = 1332
Score = 30.7 bits (66), Expect = 6.1
Identities = 20/67 (29%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Frame = +3
Query: 249 DDILVDSTEDMEAEESNQ-INEQKPKTEQEVITDNQEYYEIRLVDNADIESKFIKILPKQ 425
D+ D E +E EE + + E++ K E+E NQE E L+ + +IE+K K + K+
Sbjct: 640 DESEEDGEEKVEKEEKEEELEEEEGKEEEEEEEGNQETAEF-LLSSEEIETKDEKEMDKE 698
Query: 426 IENSNKQ 446
+ + +
Sbjct: 699 NNDGSSE 705
>BC112201-1|AAI12202.1| 1849|Homo sapiens BTAF1 RNA polymerase II,
B-TFIID transcription factor-associated, 170kDa protein.
Length = 1849
Score = 30.3 bits (65), Expect = 8.1
Identities = 21/106 (19%), Positives = 48/106 (45%), Gaps = 2/106 (1%)
Frame = +3
Query: 63 PSRKNILARETTWQEIAKQISRPVEECRKRWRGLRDSYTRSKRLGSMPGYTKLVVYKKLN 242
P +IL+ + EIA +R EC++ L D + +G+ L + + +
Sbjct: 752 PRLLDILSEHLYYDEIAVPFTRMQNECKQLISSLADVHI---EVGNRVNNNVLTIDQASD 808
Query: 243 FLDDILVDSTE--DMEAEESNQINEQKPKTEQEVITDNQEYYEIRL 374
+ + ++T D+ + Q++ ++ + + V NQE+ ++L
Sbjct: 809 LVTTVFNEATSSFDLNPQVLQQLDSKRQQVQMTVTETNQEWQVLQL 854
>BC047009-1|AAH47009.1| 328|Homo sapiens BTAF1 protein protein.
Length = 328
Score = 30.3 bits (65), Expect = 8.1
Identities = 21/106 (19%), Positives = 48/106 (45%), Gaps = 2/106 (1%)
Frame = +3
Query: 63 PSRKNILARETTWQEIAKQISRPVEECRKRWRGLRDSYTRSKRLGSMPGYTKLVVYKKLN 242
P +IL+ + EIA +R EC++ L D + +G+ L + + +
Sbjct: 190 PRLLDILSEHLYYDEIAVPFTRMQNECKQLISSLADVHI---EVGNRVNNNVLTIDQASD 246
Query: 243 FLDDILVDSTE--DMEAEESNQINEQKPKTEQEVITDNQEYYEIRL 374
+ + ++T D+ + Q++ ++ + + V NQE+ ++L
Sbjct: 247 LVTTVFNEATSSFDLNPQVLQQLDSKRQQVQMTVTETNQEWQVLQL 292
>BC030273-1|AAH30273.1| 560|Homo sapiens BTAF1 protein protein.
Length = 560
Score = 30.3 bits (65), Expect = 8.1
Identities = 21/106 (19%), Positives = 48/106 (45%), Gaps = 2/106 (1%)
Frame = +3
Query: 63 PSRKNILARETTWQEIAKQISRPVEECRKRWRGLRDSYTRSKRLGSMPGYTKLVVYKKLN 242
P +IL+ + EIA +R EC++ L D + +G+ L + + +
Sbjct: 422 PRLLDILSEHLYYDEIAVPFTRMQNECKQLISSLADVHI---EVGNRVNNNVLTIDQASD 478
Query: 243 FLDDILVDSTE--DMEAEESNQINEQKPKTEQEVITDNQEYYEIRL 374
+ + ++T D+ + Q++ ++ + + V NQE+ ++L
Sbjct: 479 LVTTVFNEATSSFDLNPQVLQQLDSKRQQVQMTVTETNQEWQVLQL 524
>AL365398-1|CAI14103.1| 1849|Homo sapiens BTAF1 RNA polymerase II,
B-TFIID transcription factor-associated, 170kDa (Mot1
protein.
Length = 1849
Score = 30.3 bits (65), Expect = 8.1
Identities = 21/106 (19%), Positives = 48/106 (45%), Gaps = 2/106 (1%)
Frame = +3
Query: 63 PSRKNILARETTWQEIAKQISRPVEECRKRWRGLRDSYTRSKRLGSMPGYTKLVVYKKLN 242
P +IL+ + EIA +R EC++ L D + +G+ L + + +
Sbjct: 752 PRLLDILSEHLYYDEIAVPFTRMQNECKQLISSLADVHI---EVGNRVNNNVLTIDQASD 808
Query: 243 FLDDILVDSTE--DMEAEESNQINEQKPKTEQEVITDNQEYYEIRL 374
+ + ++T D+ + Q++ ++ + + V NQE+ ++L
Sbjct: 809 LVTTVFNEATSSFDLNPQVLQQLDSKRQQVQMTVTETNQEWQVLQL 854
>AL359198-2|CAH73478.1| 1849|Homo sapiens BTAF1 RNA polymerase II,
B-TFIID transcription factor-associated, 170kDa (Mot1
protein.
Length = 1849
Score = 30.3 bits (65), Expect = 8.1
Identities = 21/106 (19%), Positives = 48/106 (45%), Gaps = 2/106 (1%)
Frame = +3
Query: 63 PSRKNILARETTWQEIAKQISRPVEECRKRWRGLRDSYTRSKRLGSMPGYTKLVVYKKLN 242
P +IL+ + EIA +R EC++ L D + +G+ L + + +
Sbjct: 752 PRLLDILSEHLYYDEIAVPFTRMQNECKQLISSLADVHI---EVGNRVNNNVLTIDQASD 808
Query: 243 FLDDILVDSTE--DMEAEESNQINEQKPKTEQEVITDNQEYYEIRL 374
+ + ++T D+ + Q++ ++ + + V NQE+ ++L
Sbjct: 809 LVTTVFNEATSSFDLNPQVLQQLDSKRQQVQMTVTETNQEWQVLQL 854
>AJ001017-1|CAA04475.1| 1849|Homo sapiens TBP associated factor
protein.
Length = 1849
Score = 30.3 bits (65), Expect = 8.1
Identities = 21/106 (19%), Positives = 48/106 (45%), Gaps = 2/106 (1%)
Frame = +3
Query: 63 PSRKNILARETTWQEIAKQISRPVEECRKRWRGLRDSYTRSKRLGSMPGYTKLVVYKKLN 242
P +IL+ + EIA +R EC++ L D + +G+ L + + +
Sbjct: 752 PRLLDILSEHLYYDEIAVPFTRMQNECKQLISSLADVHI---EVGNRVNNNVLTIDQASD 808
Query: 243 FLDDILVDSTE--DMEAEESNQINEQKPKTEQEVITDNQEYYEIRL 374
+ + ++T D+ + Q++ ++ + + V NQE+ ++L
Sbjct: 809 LVTTVFNEATSSFDLNPQVLQQLDSKRQQVQMTVTETNQEWQVLQL 854
>AF038362-1|AAC04573.1| 1849|Homo sapiens TBP-associated factor 172
protein.
Length = 1849
Score = 30.3 bits (65), Expect = 8.1
Identities = 21/106 (19%), Positives = 48/106 (45%), Gaps = 2/106 (1%)
Frame = +3
Query: 63 PSRKNILARETTWQEIAKQISRPVEECRKRWRGLRDSYTRSKRLGSMPGYTKLVVYKKLN 242
P +IL+ + EIA +R EC++ L D + +G+ L + + +
Sbjct: 752 PRLLDILSEHLYYDEIAVPFTRMQNECKQLISSLADVHI---EVGNRVNNNVLTIDQASD 808
Query: 243 FLDDILVDSTE--DMEAEESNQINEQKPKTEQEVITDNQEYYEIRL 374
+ + ++T D+ + Q++ ++ + + V NQE+ ++L
Sbjct: 809 LVTTVFNEATSSFDLNPQVLQQLDSKRQQVQMTVTETNQEWQVLQL 854
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 105,183,480
Number of Sequences: 237096
Number of extensions: 2201922
Number of successful extensions: 5849
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 5561
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5840
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9478778060
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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