Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1238
         (710 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC354.11c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    27   2.0  
SPAC1D4.07c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual        26   6.1  
SPAC328.02 |||Ariadne homolog|Schizosaccharomyces pombe|chr 1|||...    26   6.1  
SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces...    25   8.1  
SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyce...    25   8.1  

>SPBC354.11c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 172

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = -2

Query: 442 RPSALRNMKQGGGIMRNLPYFILSFFMET 356
           R S+ R+ KQ G +++ +P F+  FF E+
Sbjct: 34  RLSSWRSRKQTGCLIKGIPLFLFFFFFES 62


>SPAC1D4.07c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 146

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 7/24 (29%), Positives = 16/24 (66%)
 Frame = +2

Query: 527 LHIYVGIILHICQQIKFHFYFYCL 598
           +HIY+  ++ +C++ K H   +C+
Sbjct: 94  VHIYMSALIKVCKKSKPHLQTHCI 117


>SPAC328.02 |||Ariadne homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 504

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = +2

Query: 560 CQQIKFHFYFYCLDVWTSSQPTW 628
           C++ K+ F + CL  WT     W
Sbjct: 309 CKKCKYEFCWVCLGPWTEHGNNW 331


>SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 897

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = +3

Query: 393 FLIIPPPCFIFLNAEGRDHPSV 458
           FL++PPP F    A  R  PSV
Sbjct: 138 FLLVPPPQFFHSEAGERPTPSV 159


>SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2310

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 16/47 (34%), Positives = 19/47 (40%)
 Frame = +2

Query: 464  HSRNLSSSV*CTICCLYVSIILHIYVGIILHICQQIKFHFYFYCLDV 604
            H +  S  V CT CC Y       Y GII        FH Y Y + +
Sbjct: 1156 HDKLTSKKVPCTFCCWY-------YAGIIF---LNTLFHHYEYVMSI 1192


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,859,842
Number of Sequences: 5004
Number of extensions: 58964
Number of successful extensions: 135
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 331187010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)