Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1237
         (494 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI0000D5755E Cluster: PREDICTED: similar to ribosomal ...    35   1.1  
UniRef50_Q0WWS3 Cluster: Putative uncharacterized protein; n=1; ...    35   1.1  
UniRef50_A7ANQ9 Cluster: PWI domain containing protein; n=1; Bab...    34   2.0  
UniRef50_UPI0000D566B0 Cluster: PREDICTED: hypothetical protein;...    32   8.1  
UniRef50_Q1NS85 Cluster: Sensor protein; n=2; delta proteobacter...    32   8.1  

>UniRef50_UPI0000D5755E Cluster: PREDICTED: similar to ribosomal
            protein S6 kinase, 90kDa, polypeptide 5 isoform a; n=2;
            Endopterygota|Rep: PREDICTED: similar to ribosomal
            protein S6 kinase, 90kDa, polypeptide 5 isoform a -
            Tribolium castaneum
          Length = 928

 Score = 34.7 bits (76), Expect = 1.1
 Identities = 25/78 (32%), Positives = 40/78 (51%)
 Frame = -1

Query: 488  SSSSILNSD*YNVSNRIPKPTRQKFIYTRTRYAHAKHNARAREVRRDYENFEITIKHF*I 309
            SSS I+ SD  +V  ++    RQK +Y +TR++      + +E+  D     + +KH   
Sbjct: 838  SSSGIVMSDKNSVDTKVVGRKRQKKVYVQTRWSERIRRRQRQEIDLD----PVPVKHNRK 893

Query: 308  RRRDELAKRDS*S*SSVR 255
            R+ DE    +S S SS R
Sbjct: 894  RKVDERESIESTSSSSKR 911


>UniRef50_Q0WWS3 Cluster: Putative uncharacterized protein; n=1;
          Arabidopsis thaliana|Rep: Putative uncharacterized
          protein - Arabidopsis thaliana (Mouse-ear cress)
          Length = 80

 Score = 34.7 bits (76), Expect = 1.1
 Identities = 15/27 (55%), Positives = 17/27 (62%)
 Frame = +1

Query: 13 MKNAVNCAS*CELQDTFEHRHFERTLR 93
          MKN   C + CELQ+   HR FER LR
Sbjct: 1  MKNVAKCDTWCELQNPVNHRVFERKLR 27


>UniRef50_A7ANQ9 Cluster: PWI domain containing protein; n=1;
           Babesia bovis|Rep: PWI domain containing protein -
           Babesia bovis
          Length = 374

 Score = 33.9 bits (74), Expect = 2.0
 Identities = 31/122 (25%), Positives = 56/122 (45%), Gaps = 1/122 (0%)
 Frame = -2

Query: 490 RRRRRY*IAINTTSATEYRNQPDKNSYTRELATRTLNITRAPERFDVIMKILK*Q*NIFR 311
           RRRR Y  + + +S+  YR    + S +R L++ T + + +   +    +    +   + 
Sbjct: 239 RRRRSYSSSRSRSSSASYRRTLRRRSVSRTLSSSTSHRSVSSRSYSGDRRSPHPR-RSYS 297

Query: 310 SVGETS*RNAIRN-RSLRSDFN*IKQHVTTSTNA*RGTRQRDGSRARHEPRNVINVFYAA 134
           S   TS  ++ R+  S RS ++ I      S +  R  R+ DG R R  PR+  +  Y+ 
Sbjct: 298 SHSSTSSPHSSRSVYSSRSSYSSIDSRRKRSVSYSRDRRRDDGRRGRRRPRSYSSSDYSR 357

Query: 133 GP 128
            P
Sbjct: 358 SP 359


>UniRef50_UPI0000D566B0 Cluster: PREDICTED: hypothetical protein;
           n=1; Tribolium castaneum|Rep: PREDICTED: hypothetical
           protein - Tribolium castaneum
          Length = 243

 Score = 31.9 bits (69), Expect = 8.1
 Identities = 16/45 (35%), Positives = 24/45 (53%)
 Frame = -1

Query: 140 CSRPSDRSGPGCVSTDRNVRSKCRCSNVSCSSHYDAQLTAFFIDP 6
           C  P   +GPG  S    V +K  C+N SC+++Y+ + T F   P
Sbjct: 83  CEAPLVCNGPGKYSV---VPTKTDCNNDSCNNYYECEATWFLFVP 124


>UniRef50_Q1NS85 Cluster: Sensor protein; n=2; delta proteobacterium
           MLMS-1|Rep: Sensor protein - delta proteobacterium
           MLMS-1
          Length = 537

 Score = 31.9 bits (69), Expect = 8.1
 Identities = 17/45 (37%), Positives = 24/45 (53%)
 Frame = +1

Query: 61  FEHRHFERTLRSVETHPGPLLSEGRLHKKH*SHCVARAALVIRRV 195
           F+HR  + ++R VE   GP+L EGR       H V+  A V R +
Sbjct: 212 FQHRRADGSIREVEVFAGPILLEGRSLLYSIVHDVSERARVEREL 256


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 446,922,081
Number of Sequences: 1657284
Number of extensions: 7870730
Number of successful extensions: 19255
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 18735
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19253
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 28855457139
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)