Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1237
         (494 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1604.19c |||TRAPP complex subunit Trs85 |Schizosaccharomyces...    27   2.1  
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo...    26   2.7  
SPAC20G8.02 |||phospholipase|Schizosaccharomyces pombe|chr 1|||M...    25   4.7  
SPCC126.06 |twf1||twinfilin|Schizosaccharomyces pombe|chr 3|||Ma...    25   4.7  
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce...    25   6.3  
SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6 |Schizosacc...    25   6.3  

>SPBC1604.19c |||TRAPP complex subunit Trs85 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 658

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 13/45 (28%), Positives = 22/45 (48%)
 Frame = +2

Query: 287 SLARLSDGSKNVLLLFQNFHNHVEPLWRARYV*RARSEFSCI*IF 421
           S    SD +K +  + +N      P WR+    +A SE SC+ ++
Sbjct: 314 SFCSSSDDAKPITFVTKNLRKFPIPEWRSSLEVQAESEQSCLPLY 358


>SPCC18.03 |||shuttle craft like transcriptional
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1077

 Score = 26.2 bits (55), Expect = 2.7
 Identities = 15/45 (33%), Positives = 19/45 (42%), Gaps = 3/45 (6%)
 Frame = +2

Query: 50  CRTHLNIDISNAHCGPWRHIQDHSCLRAGC---IKNINHIAWLVP 175
           C   +N   S   CG   H+   SC+R  C   I+  N  AW  P
Sbjct: 200 CTDTINPSTSIWSCGTCYHVFHLSCIRKWCKNSIEQRNEDAWRCP 244


>SPAC20G8.02 |||phospholipase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 757

 Score = 25.4 bits (53), Expect = 4.7
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +2

Query: 260 PKTTITNRVSLARLSDGSKNVLLLFQNFHNHVEP 361
           PKT +T  +S +  S  S   +L  QNF+N   P
Sbjct: 577 PKTNLTRSLSYSEQSFDSGVSILSCQNFYNIFHP 610


>SPCC126.06 |twf1||twinfilin|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 328

 Score = 25.4 bits (53), Expect = 4.7
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = +1

Query: 52  QDTFEHRHFERTLRSVETHPGPLLSEG 132
           QD  E + +  +++S  TH  PL++ G
Sbjct: 147 QDELERKEYNESMQSSVTHKRPLVTRG 173


>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1666

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 12/43 (27%), Positives = 22/43 (51%)
 Frame = +3

Query: 342  FIITSNLSGARVMFSVRVASSRVYEFLSGWFRYSVADVVLIAI 470
            F   +NL     + +++   SRV E++    +Y V ++  IAI
Sbjct: 1014 FSENANLQNLLFLTAIKADKSRVMEYIDKLDKYDVDEIAEIAI 1056


>SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 745

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = -2

Query: 469 IAINTTSATEYRNQPDKNSYTRELATRTLNITRAP 365
           +++NT   T Y    DKN  TR  A R ++  R P
Sbjct: 106 LSVNTVQKTLY----DKNPLTRSTAIRVMSSIRVP 136


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,858,442
Number of Sequences: 5004
Number of extensions: 33380
Number of successful extensions: 82
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 82
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 194131776
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)