Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1237
         (494 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U42839-7|AAC69012.1| 1722|Caenorhabditis elegans Drosophila crum...    27   5.7  
AF022982-3|AAB69932.1|  670|Caenorhabditis elegans Hypothetical ...    27   5.7  
AF067948-6|AAC17701.1|  337|Caenorhabditis elegans Seven tm rece...    27   7.5  

>U42839-7|AAC69012.1| 1722|Caenorhabditis elegans Drosophila crumbs
           homolog protein 1 protein.
          Length = 1722

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 17/44 (38%), Positives = 20/44 (45%), Gaps = 6/44 (13%)
 Frame = -1

Query: 158 CD*CFLCSRPSD-RSGPGCVSTDRNVRSKC-----RCSNVSCSS 45
           C+ C   S   D  SGP C+  D     KC     +CS VSC S
Sbjct: 472 CEDCVNSSNCLDVESGPVCICDDGYFGQKCDQKHDKCSKVSCPS 515


>AF022982-3|AAB69932.1|  670|Caenorhabditis elegans Hypothetical
           protein T23B12.6 protein.
          Length = 670

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = -2

Query: 166 PRNVINVF-YAAGPQTGVVLDVSPRTAMCVRNVDVQMCPA 50
           PR++IN+  Y+ GP    +LDV     +C     +  CP+
Sbjct: 627 PRSLINLSNYSGGPTPQELLDVIDDNDICCSTPSLSRCPS 666


>AF067948-6|AAC17701.1|  337|Caenorhabditis elegans Seven tm
           receptor protein 30 protein.
          Length = 337

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 11/50 (22%), Positives = 26/50 (52%)
 Frame = +3

Query: 321 FYCYFKIFIITSNLSGARVMFSVRVASSRVYEFLSGWFRYSVADVVLIAI 470
           F  YF++ I+  N+S +  M   +   S +Y+  S  F + +  ++++ +
Sbjct: 219 FRMYFRMNILLQNVSKSYEMIQRQFFKSLIYQITSPTFTFYIPAILILTV 268


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,503,896
Number of Sequences: 27780
Number of extensions: 195230
Number of successful extensions: 441
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 432
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 441
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 935344784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)