Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1236
         (775 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    27   0.15 
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    26   0.34 
AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C prot...    25   0.59 
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    23   2.4  

>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 27.5 bits (58), Expect = 0.15
 Identities = 17/85 (20%), Positives = 33/85 (38%)
 Frame = +1

Query: 493 GELGQGNGGVVMKVRHKSTGLIMARKLIHLEVKPAIKKQIIRELKVLHECNFAHIVGFYG 672
           GE G    G +       T + +A K +        +   + E  ++ +    +++   G
Sbjct: 642 GEFGDVCRGKLKLPPDGRTEIDVAIKTLKPGSADKARNDFLTEASIMGQFEHPNVIFLQG 701

Query: 673 AFYSDGEISICMEYMDGGSLDLILK 747
                  + I  E+M+ GSLD  L+
Sbjct: 702 VVTKSNPVMIITEFMENGSLDTFLR 726


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 26.2 bits (55), Expect = 0.34
 Identities = 11/39 (28%), Positives = 22/39 (56%)
 Frame = -1

Query: 169 KYPFVKALFYNVHTATVFLTKKLKHKQNYSKRVPNPAIN 53
           +YP  ++LF    T  ++    L+HK+  ++R  +P +N
Sbjct: 130 EYPTNRSLFIREQTEEMYREMLLEHKKRRARRDIHPELN 168


>AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C
           protein.
          Length = 149

 Score = 25.4 bits (53), Expect = 0.59
 Identities = 10/40 (25%), Positives = 21/40 (52%)
 Frame = +1

Query: 655 IVGFYGAFYSDGEISICMEYMDGGSLDLILKKAGRIPESI 774
           +V  +  F +   +   MEY++GG L   +++ G+  E +
Sbjct: 47  LVQLHSCFQTMDRLYFVMEYVNGGDLMYQIQQCGKFKEPV 86


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 19/77 (24%), Positives = 33/77 (42%), Gaps = 1/77 (1%)
 Frame = +1

Query: 472 DDDFEKLGELGQGNGGVVMKVRHKSTGLIMARKLIHLEVKPAIK-KQIIRELKVLHECNF 648
           D+D  ++  LG+ +GG   +   + T L+M  +    E    +  K +   + VL   + 
Sbjct: 22  DNDRSRIARLGRDDGGKSRQSSFEVTSLLMREETEDAEDTQTLNLKHLRAAVLVLTNPSN 81

Query: 649 AHIVGFYGAFYSDGEIS 699
             +    GA  S GE S
Sbjct: 82  EVVAVALGALLSKGEES 98


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 185,173
Number of Sequences: 438
Number of extensions: 3677
Number of successful extensions: 18
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24275400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)