Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1234
         (548 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC20G8.07c |erg2||C-8 sterol isomerase Erg2 |Schizosaccharomyc...    26   3.2  
SPBC83.11 |||triose phosphate transporter|Schizosaccharomyces po...    25   5.6  
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple...    25   5.6  
SPBP23A10.07 |rpa2||DNA-directed RNA polymerase I complex subuni...    25   9.7  

>SPAC20G8.07c |erg2||C-8 sterol isomerase Erg2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 219

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = -1

Query: 503 HAAFSRSISGGGTAILSAGAGFCRRESDSGVMIRGREVFADFNGL 369
           HA+FS  +   GT I + G        D   ++RGR++ A  N L
Sbjct: 95  HASFSEYLIFFGTPIGTEGHSGVHMADDYFTILRGRQLAASANDL 139


>SPBC83.11 |||triose phosphate transporter|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 434

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -3

Query: 465 SDFKRGRGVLSQRVGLWRYD 406
           ++F +G G+    +GLW YD
Sbjct: 277 TNFTQGSGIFLTAIGLWLYD 296


>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
           subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1522

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 13/46 (28%), Positives = 23/46 (50%)
 Frame = +1

Query: 364 TAKPLKSANTSRPRIITPESDSLRQNPAPALKIAVPPPLILREKAA 501
           T+  +K ++ S P +  P   +L+ NP+P+      PP+    K A
Sbjct: 301 TSMNMKQSSASHPVLQPPAPSTLQFNPSPSPAAPSYPPVDASVKQA 346


>SPBP23A10.07 |rpa2||DNA-directed RNA polymerase I complex subunit
           Rpa2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1227

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +1

Query: 406 IITPESDSLRQNPAPALKIAVPPPLILREKAAWNRV 513
           I+T  SD + Q P+  L + V PP ++  ++ W  V
Sbjct: 580 IVTHPSD-VSQIPSLLLSLGVDPPSVVGHESGWGCV 614


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.311    0.125    0.363 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,653,045
Number of Sequences: 5004
Number of extensions: 23051
Number of successful extensions: 49
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 49
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)