Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1234
         (548 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0409 + 17817046-17817126,17818320-17818523,17818744-178188...    30   1.1  
07_03_0793 + 21552499-21552729                                         30   1.4  
04_03_0856 + 20336390-20336906,20337276-20337397                       27   7.5  
04_04_1439 + 33614112-33614123,33614278-33615649,33615705-33616141     27   9.9  

>07_03_0409 +
           17817046-17817126,17818320-17818523,17818744-17818856,
           17819446-17819491,17819741-17819787,17820250-17820325,
           17820865-17820937,17821059-17821204,17821382-17821467,
           17821734-17821873,17821944-17822083,17822171-17822221,
           17823644-17823702,17823793-17823949,17824793-17824845,
           17824936-17825034,17825876-17825990,17826075-17826197,
           17826417-17826584
          Length = 658

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 17/43 (39%), Positives = 23/43 (53%)
 Frame = -1

Query: 428 ESDSGVMIRGREVFADFNGLAVEFRDSTTETRLFLRATVLSPV 300
           ES+ GV+I    +   FNG        +T TRL LRA +L P+
Sbjct: 135 ESERGVIITNHSLSVTFNGSFDHMNIDSTRTRL-LRANLLQPL 176


>07_03_0793 + 21552499-21552729
          Length = 76

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -1

Query: 491 SRSISGGGTAILSAGAGFCRRESDSGVMIRGREV 390
           SR   GGG  +  +G G  RR  D+G + RG ++
Sbjct: 18  SRRRQGGGQRVNRSGGGSMRRGGDNGSLARGDDI 51


>04_03_0856 + 20336390-20336906,20337276-20337397
          Length = 212

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 13/30 (43%), Positives = 15/30 (50%)
 Frame = -1

Query: 488 RSISGGGTAILSAGAGFCRRESDSGVMIRG 399
           R   GGG ++  A AG  RR    G  IRG
Sbjct: 48  RKDGGGGASLEGAAAGASRRRGGGGGQIRG 77


>04_04_1439 + 33614112-33614123,33614278-33615649,33615705-33616141
          Length = 606

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 3/36 (8%)
 Frame = -1

Query: 530 ALRAWH---TRFHAAFSRSISGGGTAILSAGAGFCR 432
           A + WH     FH A    ++GGG  +  A AGF R
Sbjct: 351 APKKWHDYTVEFHFAAPTELAGGGPLLRLAEAGFTR 386


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.311    0.125    0.363 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,528,556
Number of Sequences: 37544
Number of extensions: 214157
Number of successful extensions: 571
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 556
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 569
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1233951264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)