Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1234
         (548 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81118-8|CAB03326.3|  297|Caenorhabditis elegans Hypothetical pr...    31   0.55 
L10986-3|AAA28018.1|  650|Caenorhabditis elegans Abnormal cell m...    27   6.7  
L10986-2|AAK84523.2|  667|Caenorhabditis elegans Abnormal cell m...    27   6.7  
L10986-1|AAR25648.1|  779|Caenorhabditis elegans Abnormal cell m...    27   6.7  

>Z81118-8|CAB03326.3|  297|Caenorhabditis elegans Hypothetical
           protein T10G3.3 protein.
          Length = 297

 Score = 31.1 bits (67), Expect = 0.55
 Identities = 15/36 (41%), Positives = 19/36 (52%)
 Frame = -1

Query: 395 EVFADFNGLAVEFRDSTTETRLFLRATVLSPVDVLG 288
           E   D NG     RD+  +     RAT LSPV++LG
Sbjct: 149 ECVMDSNGKVSLHRDAAPQQNTVTRATTLSPVEILG 184


>L10986-3|AAA28018.1|  650|Caenorhabditis elegans Abnormal cell
           migration protein10, isoform b protein.
          Length = 650

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 3/35 (8%)
 Frame = +1

Query: 385 ANTSRPRIITPESDSLRQNPAP---ALKIAVPPPL 480
           A+TS P I   ESDS  + PAP   A  + +PPP+
Sbjct: 560 ASTSSPTIPQEESDSDEEFPAPPPVASVMRMPPPV 594


>L10986-2|AAK84523.2|  667|Caenorhabditis elegans Abnormal cell
           migration protein10, isoform a protein.
          Length = 667

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 3/35 (8%)
 Frame = +1

Query: 385 ANTSRPRIITPESDSLRQNPAP---ALKIAVPPPL 480
           A+TS P I   ESDS  + PAP   A  + +PPP+
Sbjct: 577 ASTSSPTIPQEESDSDEEFPAPPPVASVMRMPPPV 611


>L10986-1|AAR25648.1|  779|Caenorhabditis elegans Abnormal cell
           migration protein10, isoform c protein.
          Length = 779

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 3/35 (8%)
 Frame = +1

Query: 385 ANTSRPRIITPESDSLRQNPAP---ALKIAVPPPL 480
           A+TS P I   ESDS  + PAP   A  + +PPP+
Sbjct: 689 ASTSSPTIPQEESDSDEEFPAPPPVASVMRMPPPV 723


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.311    0.125    0.363 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,544,389
Number of Sequences: 27780
Number of extensions: 144047
Number of successful extensions: 252
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 238
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 252
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1113119490
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)