Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1232
         (824 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC337.09 |erg28||Erg28 protein|Schizosaccharomyces pombe|chr 2...    35   0.016
SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces po...    29   0.80 
SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces pombe...    27   3.2  
SPAC22F8.10c |sap145||U2 snRNP-associated protein Sap145 |Schizo...    27   4.3  
SPAC4F8.02c |mrpl40|SPAC644.02|mitochondrial ribosomal protein s...    26   5.6  
SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac...    26   7.5  

>SPBC337.09 |erg28||Erg28 protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 136

 Score = 34.7 bits (76), Expect = 0.016
 Identities = 19/43 (44%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
 Frame = -2

Query: 811 LSKITRFYCDWNCSNPDLYSFNSRCVF--ITIRFLS*ICLFNT 689
           LS I RFYC ++ +NPD+Y F  +C +      FLS   LF T
Sbjct: 62  LSAIVRFYCAYHITNPDVY-FLCQCTYYLACFHFLSEWLLFRT 103


>SPCC553.03 |pex1||AAA family ATPase Pex1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 937

 Score = 29.1 bits (62), Expect = 0.80
 Identities = 25/89 (28%), Positives = 41/89 (46%), Gaps = 5/89 (5%)
 Frame = -3

Query: 315 LQRLPHP--SNRNALLLHGRNRQGGVHDIVISRLISKTFDFLSIILEHSFFYCLVVSS-- 148
           +Q  PH     RNA+ LH      G      S L+   FD+ S+   +S ++ ++VS   
Sbjct: 355 MQPFPHEFAQVRNAVFLHQNIYINGPKGCGKSNLVHSLFDYYSL---NSIYFQMIVSCSE 411

Query: 147 -HRSSWAAAMAGPNPSLLQRKRLKKDMSY 64
             RSS+A   +  N   +Q +R +  + Y
Sbjct: 412 IDRSSFAKFQSFWNNVFIQAERYEPSIIY 440


>SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 310

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 12/21 (57%), Positives = 13/21 (61%)
 Frame = -2

Query: 427 GGQAHSPPGVKWLLEPIDIYN 365
           GG  H P  V WLL P DIY+
Sbjct: 235 GGPLHDPNTVMWLLRP-DIYS 254


>SPAC22F8.10c |sap145||U2 snRNP-associated protein Sap145
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 601

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 6/42 (14%)
 Frame = +1

Query: 115 PRHCCCP*---ATVTTYH---KAIKKAVFQNNTQKVKRFRNQ 222
           P+HCC      A + T     K ++K + +NN QK K+ RNQ
Sbjct: 7   PKHCCLDFLLMAEIQTAQNPLKELEKILERNNKQKNKKSRNQ 48


>SPAC4F8.02c |mrpl40|SPAC644.02|mitochondrial ribosomal protein
           subunit L40|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 279

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +2

Query: 716 ETNRYKNASRIEAV*IRITAVPV 784
           ETN+Y N   IE V +R   VP+
Sbjct: 90  ETNKYTNGITIEGVNVRSVKVPI 112


>SPAC18G6.05c |||translation elongation regulator Gcn1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2670

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 15/61 (24%), Positives = 31/61 (50%)
 Frame = +2

Query: 461 IQYVKIDSNYKSDILCSNKPTIRRSTRESSYKCNGLFIVPSVINLKKCFIAYLAIEAINH 640
           ++ + + S++ S  L   KP++  S  +S+ +C        + +LKK  +++L  E  N 
Sbjct: 143 LELLPLQSSFLSYALRDGKPSVADSAIKSTRRCYRSLFCKKMDSLKK-LVSFLLTETENA 201

Query: 641 I 643
           I
Sbjct: 202 I 202


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,293,602
Number of Sequences: 5004
Number of extensions: 64080
Number of successful extensions: 128
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 404442380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)