Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1232
         (824 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0105 - 14633097-14635529                                         29   5.9  
06_02_0196 - 12898050-12898553,12898689-12900824                       29   5.9  

>09_04_0105 - 14633097-14635529
          Length = 810

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 3/81 (3%)
 Frame = -3

Query: 288 RNALLLHGRNRQGGVH-DIVISRLISKTF-DFLSIILEHSFFYCLVVSSHRSSWAAAMAG 115
           R A  +HG   +  ++ D V+   +  T+ +F  I L    F      S+RS W+A ++G
Sbjct: 288 REASQIHGMVLKTEMYLDCVVKEALISTYTNFGFIELSEKVFEEAGTVSNRSIWSAFISG 347

Query: 114 -PNPSLLQRKRLKKDMSYHSG 55
             N SLL+  +L + M +H G
Sbjct: 348 VSNHSLLRSVQLLRRM-FHQG 367


>06_02_0196 - 12898050-12898553,12898689-12900824
          Length = 879

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 17/52 (32%), Positives = 28/52 (53%)
 Frame = -3

Query: 291 NRNALLLHGRNRQGGVHDIVISRLISKTFDFLSIILEHSFFYCLVVSSHRSS 136
           NR  LLL  RN  G VH++ +  ++      L++   H   +C+VV+  RS+
Sbjct: 482 NRCLLLLVKRNEAGHVHEVQMHDILR----VLALSKAHEQNFCIVVNHSRST 529


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,803,615
Number of Sequences: 37544
Number of extensions: 397684
Number of successful extensions: 862
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 853
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 862
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2268190812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)