Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1229
         (736 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    22   5.2  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    22   5.2  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    22   6.9  
AB252421-1|BAE80739.1|  122|Apis mellifera GB15078 protein.            22   6.9  

>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 8/27 (29%), Positives = 15/27 (55%)
 Frame = +3

Query: 315 IYIRYIHQNNIFYNFCLSVCVFVPANL 395
           +YIR     ++ Y+  +S+ +  P NL
Sbjct: 138 VYIRIFPNGSVLYSIRISLTLSCPMNL 164


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 8/27 (29%), Positives = 15/27 (55%)
 Frame = +3

Query: 315 IYIRYIHQNNIFYNFCLSVCVFVPANL 395
           +YIR     ++ Y+  +S+ +  P NL
Sbjct: 138 VYIRIFPNGSVLYSIRISLTLSCPMNL 164


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 21.8 bits (44), Expect = 6.9
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = +1

Query: 352 TIFVSLSVCLFRLISGTAGPILT 420
           ++FV LS+  F +++   GP+ T
Sbjct: 284 SVFVFLSLMEFAVVNNYMGPVAT 306


>AB252421-1|BAE80739.1|  122|Apis mellifera GB15078 protein.
          Length = 122

 Score = 21.8 bits (44), Expect = 6.9
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -3

Query: 224 LKTSHVEILIQINGTISFFC 165
           +K SH E+   +   I+FFC
Sbjct: 25  VKASHFELDYMLGRKITFFC 44


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 175,743
Number of Sequences: 438
Number of extensions: 3212
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22901220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)