Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1227
         (355 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC428.19c |||U3 snoRNP protein Utp15 |Schizosaccharomyces pomb...    25   4.5  
SPAC57A7.13 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    24   6.0  
SPBC1198.07c |||mannan endo-1,6-alpha-mannosidase |Schizosacchar...    24   7.9  

>SPBC428.19c |||U3 snoRNP protein Utp15 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 494

 Score = 24.6 bits (51), Expect = 4.5
 Identities = 8/11 (72%), Positives = 11/11 (100%)
 Frame = -3

Query: 35  IHGMRWSGPIL 3
           +HGM++SGPIL
Sbjct: 285 VHGMKYSGPIL 295


>SPAC57A7.13 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 565

 Score = 24.2 bits (50), Expect = 6.0
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -3

Query: 182 LILPARTQDCVSQYKSKTVVLNYSDPAL 99
           +++PA T+    Q+ +KT  L Y DP L
Sbjct: 295 VLIPAYTESARWQFPTKTGYLVYWDPEL 322


>SPBC1198.07c |||mannan endo-1,6-alpha-mannosidase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 507

 Score = 23.8 bits (49), Expect = 7.9
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +2

Query: 242 MRLSSFHYDVFFLFNF 289
           MR  SF ++ FFLF+F
Sbjct: 66  MRYLSFFFEFFFLFSF 81


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,373,461
Number of Sequences: 5004
Number of extensions: 22601
Number of successful extensions: 36
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 105935336
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)