Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1227
         (355 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_02_0100 + 6594787-6594878,6595443-6595728,6595809-6595887,659...    28   2.4  
10_08_0253 - 16196275-16196307,16196425-16196550,16196643-161967...    27   4.2  
04_04_0718 + 27536657-27537688                                         26   9.8  
01_01_0711 + 5506632-5507328,5507410-5507485,5507544-5508234           26   9.8  

>05_02_0100 +
           6594787-6594878,6595443-6595728,6595809-6595887,
           6595964-6596013,6597281-6597478,6597555-6597612,
           6598388-6598496,6599253-6599321,6599684-6599812,
           6599970-6600082,6600386-6600479,6602827-6602917,
           6604145-6604233,6604715-6604856,6605849-6606196,
           6606314-6607408
          Length = 1013

 Score = 27.9 bits (59), Expect = 2.4
 Identities = 18/45 (40%), Positives = 22/45 (48%), Gaps = 4/45 (8%)
 Frame = -2

Query: 165 NTRLCVAIQE*DGGTELLGPS----TQGSSHLT*MLINIYSLSRL 43
           N  LCV + + DGG EL         QGSSH T  L  + S S +
Sbjct: 40  NGLLCVGLHQTDGGDELYATECLKMNQGSSHETNKLDAVMSASTM 84


>10_08_0253 - 16196275-16196307,16196425-16196550,16196643-16196741,
            16196822-16197001,16197090-16197371,16197471-16199141,
            16199257-16199463,16199566-16199700,16199792-16200082,
            16200403-16200621,16200876-16201034,16201120-16201181,
            16201257-16201383,16201460-16201693,16201777-16202003,
            16202163-16202257,16202341-16202468,16202574-16202594,
            16202765-16202921,16203007-16203075,16203228-16203341,
            16203415-16203491,16203576-16203688,16204432-16204507,
            16204592-16204756,16204825-16204952,16205049-16205130,
            16205426-16205548,16205633-16205860,16205933-16206034,
            16206144-16206341,16206581-16206760,16206868-16207020,
            16207690-16207797,16208201-16208355,16208786-16208912,
            16209825-16209914,16209986-16210127,16210303-16210379,
            16210467-16210582,16210638-16210773,16211130-16211198,
            16211279-16211361,16211655-16211720,16211788-16211974,
            16212054-16213547,16213635-16214165,16214234-16214363,
            16214407-16215878,16216359-16216364,16216750-16217055,
            16217364-16217468,16217577-16217772,16217862-16217929,
            16218853-16220631,16221026-16221151,16221604-16221780,
            16221997-16222128,16223461-16223498,16223710-16223788,
            16224175-16224284,16224787-16224935,16225027-16225197,
            16225281-16225552,16226355-16226442,16227942-16228369
          Length = 5157

 Score = 27.1 bits (57), Expect = 4.2
 Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
 Frame = +3

Query: 93   ILECWVRVVQYHRLTLVLRHTILCSRR*YKV--RYLLNDVHSRY*N 224
            ILEC+  +V YH++ +V     L S R   +     L D H+R  N
Sbjct: 2467 ILECYREIVAYHKIDVVAHPIPLLSMRLLDMTCSVTLKDCHNRLRN 2512


>04_04_0718 + 27536657-27537688
          Length = 343

 Score = 25.8 bits (54), Expect = 9.8
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -3

Query: 152 VSQYKSKTVVLNYSDPALKDP 90
           + ++K KTVV+ Y   A+K P
Sbjct: 76  IQRFKGKTVVVKYGGAAMKSP 96


>01_01_0711 + 5506632-5507328,5507410-5507485,5507544-5508234
          Length = 487

 Score = 25.8 bits (54), Expect = 9.8
 Identities = 7/18 (38%), Positives = 13/18 (72%)
 Frame = -3

Query: 62  FIPLVASYDIHGMRWSGP 9
           F+P  A++D+H ++W  P
Sbjct: 359 FVPTAANHDLHHIQWDTP 376


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,249,816
Number of Sequences: 37544
Number of extensions: 153405
Number of successful extensions: 229
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 228
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 229
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 530315984
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)