Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1226
         (663 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-2|AAK71994.1|  463|Apis mellifera 1D-myo-inositol-trisp...    23   2.6  
EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholi...    21   7.9  
EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholi...    21   7.9  
EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholi...    21   7.9  
EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholi...    21   7.9  
EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholi...    21   7.9  
EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholi...    21   7.9  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    21   7.9  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    21   7.9  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   7.9  

>AF388659-2|AAK71994.1|  463|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform B protein.
          Length = 463

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +2

Query: 362 IFCRLQNCMDSTVKKTDDRQLMPSVVNR 445
           ++C+  +C+   V   DD Q  PSVV R
Sbjct: 104 VYCKCDDCLLGIV---DDYQRNPSVVGR 128


>EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 6 protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -2

Query: 647 HRLVDKYTFRYYSKNLFLQ 591
           HR  D+Y    + K LFLQ
Sbjct: 283 HRTPDRYVMPSWIKMLFLQ 301


>EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 5 protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -2

Query: 647 HRLVDKYTFRYYSKNLFLQ 591
           HR  D+Y    + K LFLQ
Sbjct: 283 HRTPDRYVMPSWIKMLFLQ 301


>EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 4 protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -2

Query: 647 HRLVDKYTFRYYSKNLFLQ 591
           HR  D+Y    + K LFLQ
Sbjct: 283 HRTPDRYVMPSWIKMLFLQ 301


>EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 3 protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -2

Query: 647 HRLVDKYTFRYYSKNLFLQ 591
           HR  D+Y    + K LFLQ
Sbjct: 283 HRTPDRYVMPSWIKMLFLQ 301


>EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 2 protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -2

Query: 647 HRLVDKYTFRYYSKNLFLQ 591
           HR  D+Y    + K LFLQ
Sbjct: 283 HRTPDRYVMPSWIKMLFLQ 301


>EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 1 protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -2

Query: 647 HRLVDKYTFRYYSKNLFLQ 591
           HR  D+Y    + K LFLQ
Sbjct: 283 HRTPDRYVMPSWIKMLFLQ 301


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -2

Query: 647 HRLVDKYTFRYYSKNLFLQ 591
           HR  D+Y    + K LFLQ
Sbjct: 351 HRTPDRYVMPSWIKMLFLQ 369


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -2

Query: 647 HRLVDKYTFRYYSKNLFLQ 591
           HR  D+Y    + K LFLQ
Sbjct: 351 HRTPDRYVMPSWIKMLFLQ 369


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
            protein.
          Length = 1124

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = -1

Query: 519  NITIL*NDKTTNLFI*ILLPCFSSNLLTTDGINCRSS 409
            N  +L ND+   L++ + +  F + L+  DGI    S
Sbjct: 1035 NQPLLVNDQLGQLYLDLEVEGFETKLVLEDGITSSGS 1071


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 174,154
Number of Sequences: 438
Number of extensions: 3694
Number of successful extensions: 15
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19977660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)