Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1225
         (595 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1826.01c |mot1||TATA-binding protein associated factor Mot1|...    29   0.51 
SPBC1703.11 |||optic atrophy 3 family protein|Schizosaccharomyce...    27   2.1  
SPBC1706.03 |fzo1|SPBC839.01|mitochondrial fusion GTPase protein...    27   2.1  
SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomy...    25   8.3  

>SPBC1826.01c |mot1||TATA-binding protein associated factor
            Mot1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1953

 Score = 29.1 bits (62), Expect = 0.51
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = -2

Query: 153  KKKNEVKSFIIQNVSLYSLAPTRRDLR 73
            K  NE+K  II  +S+Y +A  R+D++
Sbjct: 951  KALNEIKYLIIDEISIYKIAKERQDIQ 977


>SPBC1703.11 |||optic atrophy 3 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 218

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 11/18 (61%), Positives = 16/18 (88%)
 Frame = -2

Query: 183 KIIIKTFILQKKKNEVKS 130
           +I+ K F+LQKKKNE++S
Sbjct: 130 EIMEKQFVLQKKKNELQS 147


>SPBC1706.03 |fzo1|SPBC839.01|mitochondrial fusion GTPase
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 758

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = -2

Query: 147 KNEVKSFIIQNVSLYSLAPTRRDL 76
           +N ++SFI++N S   LAP RR L
Sbjct: 387 ENSLRSFILENRSKSKLAPVRRYL 410


>SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1142

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 21/69 (30%), Positives = 30/69 (43%), Gaps = 1/69 (1%)
 Frame = +2

Query: 119 CIIKLFTSFFFFCKIKVLIIIFVSIKLVLYSCFVSLHVGRHSRQGRRYARGNVR-ERDID 295
           C++ L+ S F F   +V+ I   SIK        S+H G   R    +  G+    R  D
Sbjct: 230 CLLSLYNSIFAFTSGRVIPIRCGSIKGPGERLVYSMHSGSTLRIWEIFGTGDHHLLRGFD 289

Query: 296 SASIFLNSI 322
              I L+SI
Sbjct: 290 IYDIILDSI 298


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,133,275
Number of Sequences: 5004
Number of extensions: 37449
Number of successful extensions: 86
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 86
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 258201856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)