Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1225
         (595 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_07_0063 - 12502305-12503361,12503567-12503668,12504251-125043...    31   0.69 
02_01_0031 - 187798-187887,187996-188179,188468-188640,188917-18...    29   2.8  
11_01_0112 + 875447-875490,875854-876359,876750-876976,877112-87...    28   6.5  

>10_07_0063 -
           12502305-12503361,12503567-12503668,12504251-12504378,
           12504653-12504764,12504876-12504927,12505260-12505517,
           12505943-12506079,12506296-12506606
          Length = 718

 Score = 31.1 bits (67), Expect = 0.69
 Identities = 17/51 (33%), Positives = 27/51 (52%)
 Frame = +2

Query: 140 SFFFFCKIKVLIIIFVSIKLVLYSCFVSLHVGRHSRQGRRYARGNVRERDI 292
           SFFF C +  L+I   + +L+L+  F+ L       QG  Y RG+  + D+
Sbjct: 198 SFFFICYLSTLLIFCNANELLLFDHFLVL-----QNQGENYGRGDSCKGDV 243


>02_01_0031 -
           187798-187887,187996-188179,188468-188640,188917-189399,
           189557-190213,190821-190837,191501-192041
          Length = 714

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 22/83 (26%), Positives = 39/83 (46%), Gaps = 5/83 (6%)
 Frame = -2

Query: 336 VYDTTIEFKKMDALSISRSRTLPRAYLRPCLECRPTWSETKQL---YKTSLIETKIIIKT 166
           +Y    EF +   L+++ +R L +  LR C E    W E  ++   Y   L   K+ +  
Sbjct: 203 IYAAAWEFDQN--LNVAAARALMQTGLRSCPESEDMWIEYLRMELTYLNKLKARKVALGE 260

Query: 165 FI--LQKKKNEVKSFIIQNVSLY 103
            +  LQKK N+  ++  +N  L+
Sbjct: 261 DVKTLQKKNNDASTWKEENKELF 283


>11_01_0112 +
           875447-875490,875854-876359,876750-876976,877112-877237,
           877313-877359,877888-878251,878396-878779
          Length = 565

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 14/30 (46%), Positives = 19/30 (63%)
 Frame = +2

Query: 230 VGRHSRQGRRYARGNVRERDIDSASIFLNS 319
           VG+ +R+GRR  +G  RER     SI+L S
Sbjct: 161 VGQSARRGRRGEQGAARERQKRVGSIYLYS 190


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,380,992
Number of Sequences: 37544
Number of extensions: 192078
Number of successful extensions: 434
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 426
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 434
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1411925004
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)