Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1225
         (595 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF071770-1|AAC35939.1|  181|Homo sapiens MHC class I antigen pro...    29   9.4  

>AF071770-1|AAC35939.1|  181|Homo sapiens MHC class I antigen
           protein.
          Length = 181

 Score = 29.5 bits (63), Expect = 9.4
 Identities = 26/89 (29%), Positives = 41/89 (46%), Gaps = 2/89 (2%)
 Frame = -2

Query: 333 YDTTIEFKKMDALSISRSRTLPRAYLRPCLECRPT--WSETKQLYKTSLIETKIIIKTFI 160
           Y    +F + D+ + S  RT PRA   P +E      W    Q++KT+    +  ++T +
Sbjct: 26  YVDDTQFVRFDSDAAS-PRTEPRA---PWIEQEGPEYWDRNTQIFKTNTQTYREDLRTLL 81

Query: 159 LQKKKNEVKSFIIQNVSLYSLAPTRRDLR 73
               ++E  S IIQ +    L P  R LR
Sbjct: 82  RYYNQSEAGSHIIQRMYGCDLGPDGRLLR 110


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 70,190,836
Number of Sequences: 237096
Number of extensions: 1132521
Number of successful extensions: 5745
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 5723
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5744
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 6268037466
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)