Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ceN-1224
         (766 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC83.19c |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    26   5.1  
SPAC3G9.14 |sak1||transcriptional repressor Sak1|Schizosaccharom...    26   6.8  

>SPBC83.19c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 119

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 15/58 (25%), Positives = 28/58 (48%), Gaps = 6/58 (10%)
 Frame = -3

Query: 563 WLLSYSSICVRALNLKVYYLFSNLLLF*ISDPALYF------YSPLLCDFDCIVLLKC 408
           W  ++ SI +   ++ +Y+ + ++ LF  S   +Y       YSP  C  D +  L+C
Sbjct: 21  WKANFESIRINLQHMHLYH-YEHIHLFTSSQSYMYHPNARFSYSPFCCFTDTLAYLRC 77


>SPAC3G9.14 |sak1||transcriptional repressor
           Sak1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 766

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = -1

Query: 412 SAFPQPPVYYYINKTYNRID 353
           S+F  PP+ YY+N  Y+ ++
Sbjct: 369 SSFSLPPIDYYLNGPYDNVE 388


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,968,416
Number of Sequences: 5004
Number of extensions: 58043
Number of successful extensions: 123
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 367316502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)