Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ceN-1224
(766 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_04_0034 + 16679624-16679940,16679980-16680199,16680319-166806... 32 0.58
03_02_0529 + 9218734-9218793,9218898-9220050,9220133-9220192,922... 31 1.3
10_03_0033 - 7248131-7248711,7248947-7249079,7249470-7249994,725... 30 1.8
12_02_0507 + 19810446-19811048,19811220-19811466,19811590-198121... 30 2.3
11_01_0638 + 5106962-5107553,5108107-5108303,5108955-5110196 30 2.3
10_02_0149 - 5873273-5874514,5874826-5875731,5875903-5876505 30 2.3
08_01_0973 + 9803917-9804519,9804691-9805596,9805908-9807149 30 2.3
06_03_0228 - 18439659-18440900,18441212-18441736,18441813-184421... 30 2.3
06_01_1011 + 7879283-7879885,7880057-7880962,7881274-7882515 30 2.3
05_03_0226 - 10645036-10646001,10646313-10646828,10646905-106472... 30 2.3
05_01_0180 + 1268129-1268237,1268382-1268731,1268903-1269808,127... 30 2.3
04_03_0383 + 15179587-15180162,15180334-15181149,15181548-15182789 30 2.3
04_03_0101 - 11242252-11243295,11243607-11244131,11244208-112445... 30 2.3
07_03_0263 - 15951011-15951818,15952009-15952526,15952949-159531... 29 3.1
02_01_0607 - 4549248-4549290,4550193-4550337,4550438-4551185,455... 29 3.1
04_03_0010 - 9318031-9318275,9318364-9319123,9319528-9319845,931... 29 5.4
03_02_0563 + 9471025-9471093,9471490-9471601,9471944-9472255,947... 28 7.1
>03_04_0034 +
16679624-16679940,16679980-16680199,16680319-16680624,
16680703-16681044,16681066-16681257,16681533-16681684,
16681803-16681974,16682017-16682338,16682414-16682862
Length = 823
Score = 31.9 bits (69), Expect = 0.58
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +1
Query: 127 QGWFSINVQIVCGPQMEIYDIVVQ*PGSVHDSRIF 231
+G + NV +VC M ++ PGSVHD R+F
Sbjct: 624 KGMTTQNVMVVCDFDMRFTFVLAGWPGSVHDMRVF 658
>03_02_0529 +
9218734-9218793,9218898-9220050,9220133-9220192,
9220284-9220363,9220486-9220730,9220815-9221138,
9221211-9221274,9221968-9222144
Length = 720
Score = 30.7 bits (66), Expect = 1.3
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = -2
Query: 186 IIYFHLRSTYYLDIDRKPSLRN 121
++Y +L S LD+DRKPS RN
Sbjct: 333 LLYSYLSSLILLDVDRKPSFRN 354
>10_03_0033 -
7248131-7248711,7248947-7249079,7249470-7249994,
7250545-7250764,7250913-7251145
Length = 563
Score = 30.3 bits (65), Expect = 1.8
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = +1
Query: 139 SINVQIVCGPQMEIYDIVVQ*PGSVHDSRIF 231
S NV VC M ++ PGSVHD R+F
Sbjct: 464 SQNVMFVCDFDMRFTFVLAGWPGSVHDMRVF 494
>12_02_0507 +
19810446-19811048,19811220-19811466,19811590-19812125,
19812397-19813620
Length = 869
Score = 29.9 bits (64), Expect = 2.3
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = +1
Query: 139 SINVQIVCGPQMEIYDIVVQ*PGSVHDSRIF 231
S NV VC M ++ PGSVHD R+F
Sbjct: 678 SQNVMCVCDFDMRFTFVLAGWPGSVHDMRVF 708
>11_01_0638 + 5106962-5107553,5108107-5108303,5108955-5110196
Length = 676
Score = 29.9 bits (64), Expect = 2.3
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = +1
Query: 139 SINVQIVCGPQMEIYDIVVQ*PGSVHDSRIF 231
S NV VC M ++ PGSVHD R+F
Sbjct: 479 SQNVMCVCDFDMRFTFVLAGWPGSVHDMRVF 509
>10_02_0149 - 5873273-5874514,5874826-5875731,5875903-5876505
Length = 916
Score = 29.9 bits (64), Expect = 2.3
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = +1
Query: 139 SINVQIVCGPQMEIYDIVVQ*PGSVHDSRIF 231
S NV VC M ++ PGSVHD R+F
Sbjct: 719 SQNVMCVCDFDMRFSFVLAGWPGSVHDMRVF 749
>08_01_0973 + 9803917-9804519,9804691-9805596,9805908-9807149
Length = 916
Score = 29.9 bits (64), Expect = 2.3
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = +1
Query: 139 SINVQIVCGPQMEIYDIVVQ*PGSVHDSRIF 231
S NV VC M ++ PGSVHD R+F
Sbjct: 719 SQNVMCVCDFDMRFTFVLAGWPGSVHDMRVF 749
>06_03_0228 -
18439659-18440900,18441212-18441736,18441813-18442118,
18442290-18442877
Length = 886
Score = 29.9 bits (64), Expect = 2.3
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = +1
Query: 139 SINVQIVCGPQMEIYDIVVQ*PGSVHDSRIF 231
S NV VC M ++ PGSVHD R+F
Sbjct: 689 SQNVMCVCDFDMRFTFVLAGWPGSVHDMRVF 719
>06_01_1011 + 7879283-7879885,7880057-7880962,7881274-7882515
Length = 916
Score = 29.9 bits (64), Expect = 2.3
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = +1
Query: 139 SINVQIVCGPQMEIYDIVVQ*PGSVHDSRIF 231
S NV VC M ++ PGSVHD R+F
Sbjct: 719 SQNVMCVCDFDMRFTFVLAGWPGSVHDMRVF 749
>05_03_0226 -
10645036-10646001,10646313-10646828,10646905-10647210,
10647382-10647984
Length = 796
Score = 29.9 bits (64), Expect = 2.3
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = +1
Query: 139 SINVQIVCGPQMEIYDIVVQ*PGSVHDSRIF 231
S NV VC M ++ PGSVHD R+F
Sbjct: 691 SQNVMCVCDFDMRFTFVLAGWPGSVHDMRVF 721
>05_01_0180 +
1268129-1268237,1268382-1268731,1268903-1269808,
1270120-1271361
Length = 868
Score = 29.9 bits (64), Expect = 2.3
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = +1
Query: 139 SINVQIVCGPQMEIYDIVVQ*PGSVHDSRIF 231
S NV VC M ++ PGSVHD R+F
Sbjct: 671 SQNVMCVCDFDMRFTFVLAGWPGSVHDMRVF 701
>04_03_0383 + 15179587-15180162,15180334-15181149,15181548-15182789
Length = 877
Score = 29.9 bits (64), Expect = 2.3
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = +1
Query: 139 SINVQIVCGPQMEIYDIVVQ*PGSVHDSRIF 231
S NV VC M ++ PGSVHD R+F
Sbjct: 680 SQNVMCVCDFDMRFTFVLAGWPGSVHDMRVF 710
>04_03_0101 -
11242252-11243295,11243607-11244131,11244208-11244513,
11244692-11245231
Length = 804
Score = 29.9 bits (64), Expect = 2.3
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = +1
Query: 139 SINVQIVCGPQMEIYDIVVQ*PGSVHDSRIF 231
S NV VC M ++ PGSVHD R+F
Sbjct: 673 SQNVMCVCDFDMRFTFVLAGWPGSVHDMRVF 703
>07_03_0263 -
15951011-15951818,15952009-15952526,15952949-15953197,
15953270-15953857
Length = 720
Score = 29.5 bits (63), Expect = 3.1
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +1
Query: 139 SINVQIVCGPQMEIYDIVVQ*PGSVHDSRIF 231
S NV +VC M +++ PGS HD R+F
Sbjct: 678 SQNVLVVCDFDMRFTFVLLGWPGSAHDMRVF 708
>02_01_0607 -
4549248-4549290,4550193-4550337,4550438-4551185,
4551504-4551980,4552066-4552374
Length = 573
Score = 29.5 bits (63), Expect = 3.1
Identities = 15/33 (45%), Positives = 17/33 (51%)
Frame = +1
Query: 130 GWFSINVQIVCGPQMEIYDIVVQ*PGSVHDSRI 228
G+ S NV +C M V PGS HDSRI
Sbjct: 463 GYTSQNVLAICDFDMRFIFAVAGWPGSAHDSRI 495
>04_03_0010 -
9318031-9318275,9318364-9319123,9319528-9319845,
9319921-9320229,9320594-9321013
Length = 683
Score = 28.7 bits (61), Expect = 5.4
Identities = 14/29 (48%), Positives = 15/29 (51%)
Frame = +1
Query: 145 NVQIVCGPQMEIYDIVVQ*PGSVHDSRIF 231
NV VC M IV PGS HD R+F
Sbjct: 558 NVLAVCDFDMRFTFIVAGWPGSAHDMRVF 586
>03_02_0563 +
9471025-9471093,9471490-9471601,9471944-9472255,
9472341-9472783
Length = 311
Score = 28.3 bits (60), Expect = 7.1
Identities = 13/29 (44%), Positives = 15/29 (51%)
Frame = +1
Query: 145 NVQIVCGPQMEIYDIVVQ*PGSVHDSRIF 231
NV +C M IV PGS HD R+F
Sbjct: 120 NVLAICDFDMRFTFIVAGWPGSAHDMRVF 148
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,430,329
Number of Sequences: 37544
Number of extensions: 305436
Number of successful extensions: 598
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 580
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 598
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2051430072
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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